FFAS03 results for PF08975

Query: PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan), from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 .`
#	Score	Template	Links and tools	%id	First	`RFDAEGNFLPEPGNTIVCHLRAGSESQKAIVALQERYKQMPEADHLAVTPASSLHMTLFQGIIEYRRTAVFWPKDLPLDAPIDDMTEILAQRLTYFAPGPDFRMKIARMLPTGLR`	Last
1	-20.900	`[S] COG5255 Uncharacterized protein conserved in bacteria`	`ali follow..`	53	119	`RYDISGNFLTEPGNTVVSHLVSGSPSEAVVLEIRERMLAMPDADRLAFTPVSSLHMTLFQGIIEYRRRLPYWPQDVPLDTSIDAMTRLYLERLKGFEGFGPFNIKVVEVVPTGLT`	233
2	-6.380	`[R] COG5565 Bacteriophage terminase large (ATPase) subunit and inactivated derivatives`	`ali follow..`	11	171	`..AYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGAIAVTFTPLRGLSAVVARYLMEKSPDRAVITMTIEDAEHYTP---QERQRVIDSYPAHEREARTRG.......`	273
3	-5.940	`[K] KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family)`	`ali follow..`	11	152	`.............THFLAVALNSGEVKERFMELKKCILEAELPGI-LFTPECCIHLTLGVYVLLDDIERQ----------EALKNLESCRRLLDGLKIPFQIKVKGLEIM.....`	240
4	-5.920	`[R] COG3136 Uncharacterized membrane protein required for alginate biosynthesis`	`ali follow..`	13	25	`NYYIAGLIPLFPTFALIAHYIVASE--------IDAMRTTIAFSMWSIIPYFIYLATLWYFSGVMRLPVAL............................................`	89
5	-5.540	[J] COG1514 2`-5` RNA ligase	`ali follow..`	11	4	`...............LFTALEIPRNAAMSLSLLRGGLPGARW------IDVENYHITL-------------------IGDVDWRTADEIIDRLDRIERP-EFQLQLSGTGAFGSK`	79
6	-5.160	`[T] KOG4458 Nitric oxide synthase-binding protein, contains PTB domain`	`ali follow..`	11	34	`........AKYVGSLDVPRPNSRVEIVAAMRRIRYEFKAKNIKKKKVSIMVSVDGVKVIL.......................................................`	85
7	-5.160	`[H] COG0302 GTP cyclohydrolase I`	`ali follow..`	13	105	`....EHHMVPIIGKAHVAYLPEGRDIFARRLQTQESITAQIADSIQRILKPEAEHMCMAMRSIRKQGSSTITTTFTGDFKEKADQQVRFMTLIRT....................`	213
8	-5.120	`[O] COG0638 20S proteasome, alpha and beta subunits`	`ali follow..`	11	17	`.FSPDGSLYQVDGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLID-DHVGCSFAGLASDGRVIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAG..`	142
9	-4.930	`[C] COG0822 NifU homolog involved in Fe-S cluster formation`	`ali follow..`	10	57	`KFKTYGCGSAIASSSLITEWVKGKSLDDALAEIAEELELPPVKIHCSILAEDAVKAAVADYRKRQENR...............................................`	128
10	-4.860	`[S] COG2357 Uncharacterized protein conserved in bacteria`	`ali follow..`	12	56	`KARRKSTMQDIAGLRIMCQFVDDIQIVKEMLFARKDFTVVDQRDYIAEHKERSYHLVV-----LYPLQTVSGEKHVLVEIQIRTLAMNFWATIE.....................`	154

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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