Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF10752.9; D3FXJ5_BACPE/1-83; Protein of unknown function (DUF2533 topsan), from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MSVHLQIAEQVTNHRRAQKEFLALDEKREAAIDRVVEDAKKGLHISLNEVNAITKEMNQIAQDFYFPPRKEVTTDMVREYINKLast
1 -6.810[Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component  ali follow..  9  68LGLQGYTQLSKFKSADILGYMVAASLLRELVLAAILFASSAGGAMTSE-LMKTTEQLEAMNVMAVNPVARVVAPRFW...... 147
2 -5.530[S] COG3860 Uncharacterized protein conserved in bacteria  ali follow..  17  6...KVRVIKNFTLPDGRVKTLPAQRKKKLIILEYMLRGIEQGRVYSEKEINEH---IRQFHEDFATVRREFVMCQFMFR.... 78
3 -5.490[O] KOG2285 E3 ubiquitin ligase, Cullin 1 component  ali follow..  14  645GKVNLIGRLQLSLEANAEKEHESIVALRELRVQEGVKILKTRKTYTLAQLMELVEILKPLFIPNRKIIKEQIDWLIENKYMER 729
4 -5.470[K] COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain  ali follow..  23  8............................................IGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITE 46
5 -5.210[O] KOG2284 E3 ubiquitin ligase, Cullin 2 component  ali follow..  10  638.....APQVNKAVEKEQEAVANTVSQDRKYYMECAIRIMKTRKVLKHNAVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQR 717
6 -5.120[K] COG3905 Predicted transcriptional regulator  ali follow..  20  73..............VQAIEDFVAREEWQLAEIEAGLAEADRGEFGTPEDLANIVGRYVK........................ 117
7 -5.110[O] COG5647 Cullin, a subunit of E3 ubiquitin ligase  ali follow..  8  640YRVKINQIYLKEERQENSDVQEQVVRDRQFELQASVRVMKQKEKMKHDDVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLER 724
8 -5.050[D] KOG2166 Cullins  ali follow..  16  585.....RIKIPLPPVDERKKVVEDVDKDRRYAIDAAVRIMKSRKVLGHQQVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 664
9 -4.890[S] COG4840 Uncharacterized protein conserved in bacteria  ali follow..  18  16....AEITTKLKMVNVGVFENLELDSVDYNALTDIYQLIKRKSNFSPREMQLFAEELRRIRK..................... 73
10 -4.690[S] COG4472 Uncharacterized protein conserved in bacteria  ali follow..  19  28....................YASLNDKGYNPINQIVGYVLSGDPAYVPRYNNARNQIRKY-------ERDEIVEELVRYYLKG 83
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;