current user: public

If you have questions about the server, please let us know.

Query: PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D, from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .
# Score Template Links and tools%idFirst MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCFRTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEKIHAFTQLKEYANPSQQDRFVMRFDMNQTQVLFEIDGKVIDKCNLHRLLNVSENCIFKVMEEDEEELFLKICIKYGEKISRYPELLEGFANKLKDAVNEDDDVKDEVYKLMRSGEDRKMECVEWNGTLTEEEKNKLRCLQMGSFNITTQFFKIGYWELEGEVLFDMVHPTLSYLLQAYKPSLSSDLIETNTMLFSDVLNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNMLILast
1 -8.800[Z] KOG0532 Leucine-rich repeat (LRR) protein, contains calponin homology domain  ali follow..  12  88................................................................................................................................................................................................................DLSRNRLSEIPI-EACHFVSLENLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLLMELDVSCNEIQTIPSQIGNLEAL. 198
2 -8.730[K] KOG0620 Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins  ali follow..  48................................................................................................................................................................................................................SRVHRVLTEDEI-ASGRSTRWTELEIHG-RVKNLSPSLWQLTHLSALFLNNNGLTRLPEIAQLTNLTMLDISNNKLRSLPTELGDMLCHLYLNNNQLRVLPYELGKLFRI. 158
3 -8.620[T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats  ali follow..  12  285....LARSSVRHLDLSHGFVFSLNSRVFETLKDLKV-NKINKIFYGLDNLQVLNLSYNLLGELYSSN-AYIDLQKNHIAIIQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF----------------------GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWL. 594
4 -8.320[R] KOG4579 Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue  ali follow..  7...................................................................................................................................................................................................................EAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKVLQIHLITLANNELKSLTSKFAMPALRSINLRFNPLNAEVRVI-IKFDMLMSPEGARAPLP.......... 128
5 -7.940[A] KOG1644 U2-associated snRNP A` protein  ali follow..  11..........................................................................................................................................................................................................................QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL-PCLTELILTNNSLVELGD......... 105
6 -7.390[T] KOG4194 Membrane glycoprotein LIG-1  ali follow..  52.......NNTRILLLSDNEIESIISNNIIRHIDFEFFYNLPNLKILNIRKNRLARIPRGSHELGHLEKLDLRSNLISTVTSEELSYLAAVRSVDLSRNLISYLPKPTTSAKVNIEKLDLASNSITDIGTDHFSSFNTLVT-------LKLARNHITTLNQFSFSRLRKLESLDLTRNMIREVRFLAFNQLPS-------------QNVSLARNDVYRLDDGMFYACEGLKHLNLSTNRVQAVTEGWMFGLTSLELDLSYNQIQSFHISSHTPKLKWLSLHSNRIQSLPSGS-RQLEELILSANSIDSLHKFA....... 358
7 -7.280[R] KOG0619 FOG: Leucine rich repeat  ali follow..  10  40...........SVSCHRRRLIAIPEGIPIETKILDL-NRLKSV-----NPEEFISYPLL---------EEIDLSDNIIANVEAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQDLHNLKSLEGDNDLVYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSLISLHLKHLNINNMPVYAFKRLFHEIDYWPLLDMMPANSLYGLNLTSLSVTNTNLSTVPFLAFKHLVYLTLNLSYNPISTIEAGSDLIRLQELHIVGAQLRTIEPHS-RFLRVLNVSQNLLETLEENV....... 340
8 -7.160[S] KOG0472 Leucine-rich repeat protein  ali follow..  123.............................................................................................................................................................................................................................AIRELENLQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISEGFQLSNLEDLDLSNNHLTTVPASFSSLLVRLNLSSNELKSLPAEINRMKRL. 222
9 -6.710[S] COG4886 Leucine-rich repeat (LRR) protein  ali follow..  10  499....LSRNSLKELNIANNKLFFLPHSTRYLVNLTYL-NNFVTFPLIITELSQLETL--------NFSHNLLSQISSKIGSLVKLKHL-YLQFNDLSNRLPQEIGLLKNLETIDLSYNAITN----------------------------------ASLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPLTTIDPAFSYSNVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLKLKHLVHLDLHANNIKIFPEEVWQVLKVVNLSSNILEKIKLPVATSKKL. 777
10 -5.990[T] KOG0531 Protein phosphatase 1, regulatory subunit, and related proteins  ali follow..  108..............................................................................................................................................................................................................................INGEDHLRLLNFQHNFITRIQN-ISNLQKLISLDLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNL--KSLDVLDLHGNQITKIENINHLCEL.. 202

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35