current user: public |
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Query: PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 | |||||||
# | Score | Template | Links and tools | %id | First | NSGSQYALCALGVGLVALGVVMIVWSLVPANTGFNNSSSGSGGDDGIDGKRNKASSVAFVLAGSGVAMLLLSLCLGLRNKQREQLRRQEIQNQRDAAREQEERETAEERAQRYAVPSYEEVVGSGQYPVRQSNLRPSVSQLPSYDDLVQVDGIHSPSATISTSSHRPGKNNRNFLPIKIRRIKSEKLPMKNTGSSQPAAGISIEPLTPPPQYE | Last |
1 | -9.140 | [U] COG1314 Preprotein translocase subunit SecG | ali follow.. | 19 | 11 | ..............IVAIGLVGLI--LQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTAVLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAQPTS--DIPR................................................................................................ | 110 |
2 | -8.840 | [S] COG4682 Predicted membrane protein | ali follow.. | 13 | 26 | ......VTYLLGLGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE................................................................................................................ | 146 |
3 | -8.280 | [S] COG2034 Predicted membrane protein | ali follow.. | 16 | 9 | HSGIEITMVMIGFAVVMLGLTLLA-----LSSAENVEYGGVVIIGPFPIVFGSSPDIAVLMVFVALILILLPLLM.......................................................................................................................................... | 82 |
4 | -7.950 | [I] KOG4142 Phospholipid methyltransferase | ali follow.. | 10 | 112 | .........GIAKLIFCFGSVLVLSSMYKLGLVGTYLGDPERVSGFPFNVNDNPMYNGSTLCFLSTALLLLTLEVFFVYRIALKFEEPFTAKIYAARDSKQAKKSE........................................................................................................... | 221 |
5 | -7.600 | [O] COG0785 Cytochrome c biogenesis protein | ali follow.. | 11 | 206 | .........ISGALIIAVGILFWSTNGLVSMPELVPMDTQIWLQEATFSLGSPLFDIALII---VAAGLFLYFWNKRQKRKEEAQRPKESGWVINPR.................................................................................................................... | 290 |
6 | -7.560 | [O] KOG2628 Farnesyl cysteine-carboxyl methyltransferase | ali follow.. | 11 | 169 | .......ILWIGTLGCIIGEIFRKVGMVHAGLAFTHRLAMTKRSDGIYAYLRHPGYFGWFLWAVSTQIILYVTWHFFASRIYDEEKDLISFFGDSYVEYQQNVWCGVPFVRGYQRP................................................................................................. | 293 |
7 | -7.410 | [S] COG5487 Small integral membrane protein | ali follow.. | 24 | 5 | ............TLMFRWGIIFLVIALIAA---------------GFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKR...................................................................................................................................... | 58 |
8 | -7.390 | [MU] COG0597 Lipoprotein signal peptidase | ali follow.. | 15 | 53 | NYGAAFSFLAAGIAIGISVTLVVMMYRSKATQKLNNIAYALIIGGALGNLFDRTFNLADTAICVGAALIVLEGFLPSKAKKQ................................................................................................................................... | 164 |
9 | -7.140 | [R] KOG3882 Tetraspanin family integral membrane protein | ali follow.. | 13 | 39 | ....KYSVFSFGFGLLLFGVWAQI--------------EKNTFVNMLSKASKLYLDPTWPLLIVGFLTFIIGFCVGSLRENT................................................................................................................................... | 111 |
10 | -7.130 | [T] KOG4293 Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains | ali follow.. | 12 | 317 | .........NIGRLLIILAISNIFYGIHLAKAG-----------------TSWNGGYGFAVAVLALTAIGLEVRKFLKKNWKKKKKEMLRTRLLWFTLGFSVTGGSIASALEGRVSGLESGGYENPNPAQVSSFS---TSLPPFVTMI................................................................. | 457 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11. |