Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF15606.6; RHSA_ECOLI/1298-1372; Bacterial toxin 34, from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst PGLALDITMIASRGNVADTGITDRVNDIINDRFWSDGKKPDRCDVLQELIDCGDISAKDAKSTQKAWNCRHSRQSLast
1 -5.840[S] KOG4850 Uncharacterized conserved protein  ali follow..  18  187....................VIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRK. 240
2 -5.620[M] COG2173 D-alanyl-D-alanine dipeptidase  ali follow..  16  101.GTAIDLTLRDEHGNILDAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGISSE.............. 162
3 -5.070[J] KOG1614 Exosomal 3`-5` exoribonuclease complex, subunit Rrp45  ali follow..  14  137..VRIDLHILDNGGNLVDAANIAALAALMT............................................. 164
4 -4.930[H] COG2918 Gamma-glutamylcysteine synthetase  ali follow..  9  25.GLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRY......... 89
5 -4.880[S] COG4499 Predicted membrane protein  ali follow..  18  329...SLDIAKLLDDPTLAMYSLTKQIEQVQSDTKLSGDEKVERLKTLEENLKEYDEKVNAQTKETDASTNTEAK.. 398
6 -4.770[R] KOG1577 Aldo/keto reductase family proteins  ali follow..  13  14PILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHEKGL 88
7 -4.710[M] COG2891 Cell shape-determining protein  ali follow..  31  63.GLIMDLILGSTLGVRA.......................................................... 78
8 -4.650[MU] COG0597 Lipoprotein signal peptidase  ali follow..  25  99..IAYALIIGGALGNLFDRLWHGFVVDMID............................................. 126
9 -4.520[J] KOG1612 Exosomal 3`-5` exoribonuclease complex, subunit Rrp42  ali follow..  28  144..LYIDGLVISSDGNLLDALGAAIKAALTN............................................. 171
10 -4.480[S] COG4508 Uncharacterized protein conserved in bacteria  ali follow..  17  1....MNLNKLFHLQKNLDTKIIDKFGELASKNYWTTEAPCEKNAILEEYIN........................ 70
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.