Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF15919.5; E1VAV2_HALED/3-129; HicB_like antitoxin of bacterial toxin-antitoxin system, from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst YPIAIEIADEQHAYSVVVPDLPGCFSAGDTFDEAVANAREAIEGHLESLSDHGDPIPKTTTIEQHLENPDYKGWVWATVEVDITPYLGKSHKINVTLPELLIKRIDTAVAKQGDVYQSRSGFLSRAALast
1 -54.500[S] COG1598 Uncharacterized conserved protein  ali follow..  16  10YPVTLTP-APEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKVLLLQSEITQQELARRIGKPKQEITRLFNLHHATKIDA---VQLAXKAL 136
2 -25.300[S] COG4226 Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters  ali follow..  8  19FKAIITYDPEIDMFRGEFVGINGADFYAKDLKGLRREGAISLKVFLEACKEDSVEPRKCYS----------GKFNARISPELHALASEAAAAQGISLNQFVEQAIQHEVHT................ 120
3 -14.900[K] COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain  ali follow..  30  1.....................................................................................MEEGITRIGVSLPKNLLDEFDRIISTRG--YSSRSEAIRDAI 40
4 -8.710[K] COG3905 Predicted transcriptional regulator  ali follow..  25  40.......................................................................................AIMTAFTVRLPDEVAEKLDQLAEKLD---RSRSYMAVQA. 75
5 -7.830[S] COG4453 Uncharacterized protein conserved in bacteria  ali follow..  15  11......................................................................................ATARGRITARLSADKQELLQLAADLSG---STLNQFVLQSA 48
6 -7.480[R] COG4710 Predicted DNA-binding protein with an HTH domain  ali follow..  11  22........................................................................................FDMATSIRLSPEMEQRLNYLASHTG---RTKAYYLREII 57
7 -6.860[K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain  ali follow..  17  25.........................................................................................ARTMTVDLGDELREFIESLIES---DYRTQSEVIRES. 59
8 -6.560[S] COG5304 Uncharacterized protein conserved in bacteria  ali follow..  14  1...MLNTLSKKKGFSLLV-----LILAGPCLKTLYCALSVPVICIKEKYKNMNKPLPKMNSDQEAEDQDLTDYLVPENFTKTTFEFAPKDKSITLRLSSELLTAVKNTASAQGMNYQK-REVLEQ.. 131
9 -5.890[KE] COG3060 Transcriptional regulator of met regulon  ali follow..  17  13................................................................................AEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNHATNSELLCEA. 61
10 -5.830[K] COG1654 Biotin operon repressor  ali follow..  31  16.....................DGEFHSGEQLGERLGMSRAAINKHIQTLRDWGVDV....................................................................... 50
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.