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Query: PF15935.5; I5B0B2_9DELT/91-316; RNase LS, bacterial toxin, from PfamA32U

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst HNNCITYRKIKQDDFELLLEYLDTEEAVKSESLEPYKTNNNHTIFKISSIYKDETTLTQYANQTILLQGRPLYIYNVIKSFINELIDFDQVVEIESDLYKIDLKPDVVREELESRLFAVYGRFDEKILKVMTPALSLMKIDVELEDYSCCIYPALRGLEGYIRMLLSEFSKEYKTVGRLGSLFDENKSYETMLFLKDDIKNDVVCKSLQNAYFMYVKHRHPLFHTDLast
1 -7.380[S] COG4735 Uncharacterized protein conserved in bacteria  ali follow..  12  13.....FLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRRNWLQHFGGDSIKLRGHGKL-YRAILLDVSKRLKLK---------ADKEMSTFEIEQQLEQFLRNTWKKMDEEHKQEFLHAV........................................................................................... 141
2 -7.100[F] KOG0673 Thymidylate synthase  ali follow..  15  135............DQLAQVISTLKLNPYDRRIILSAWNPLAIPEM-PCKPGGKPQLSSMMYQRSADMGLGVPFNIYSLLTHMIAHMCGYEEFVHVMGDCHIYNDHLEALQTQLERVPKAFPKLFFKRDAKDIGSIDSFSVDDFAVEGYNP--YGPIKM..................................................................... 295
3 -6.000[T] KOG0229 Phosphatidylinositol-4-phosphate 5-kinase  ali follow..  10  545HDDRFVIKTLKKSELQVLLRMLPK-------------------YYEHVGDHENTLITKFFGVHRITLKWGKKVRFVVMGNMFCTELKIHRRYDLKGSTQGRFTEKIKIQEKLKDLDLAYEFHMDKLLREALFKQICSFLESLNIIDYSLLL........................................................................... 681
4 -5.930[S] COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN  ali follow..  15  1..........................................................................................................................MREEARLLWEQALKTAEILIKVKRYYASVFFSQQAAEKALKALYIEIKREFPPKTHSLLRLSS----------ELGIRDEEIIDAVLDLNPEYVVTRYP..... 92
5 -5.620[F] COG0207 Thymidylate synthase  ali follow..  14  160............DQLADLIEMIKTNPNSRRLIVSAWNPEDIPNMALP---ADGKLSCQLYQRSADIFLGVPFNIYALLTHLIAREVGLDEFIHTMGDAHLYNNHIEQVKEQLSRTPHALPKLVLSDKPATIFD---FEVADISLDGYNP--DPAIKA..................................................................... 310
6 -5.470[E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases  ali follow..  7  12........ECAEATPVISLLEIHKDRQADIKRQTRVLTSPSVPTKLYHDLHGNGCRRFTAPAGTFRILYDAVELPDEVLFYLSRYCETDHLSSLAWQLFGHLPSGWARVQAIVDYVHNRLSFGYGYARSTRTAAQAHEERVGVCRDFAHLAITLCRCMNGYL................................................................ 194
7 -5.440[L] KOG3108 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  14  48...............................................EDTDDDSYQIGEYSFRTIHTVGVILEKSYEDGKTTYTLHDPEDTAKIFHAVQFGNYNDGGSKFVSPGLEEDTRVRLMGKLKNVAGNKMILIYYLQKLADNKEYEIFKLETQASYLF............................................................... 163
8 -5.310[P] COG3230 Heme oxygenase  ali follow..  11  1.................................................................MTVGVKIFIRQS-----EYRDKGIIMMTSAEPAAPVAEIEQSRVKRLKAATRGAHGDLD--------SFIMAAKPFESRENFGKFVYLFHRDLDVFFSN.............................................................. 89
9 -5.300[E] COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase  ali follow..  8  196.........ITDEELMKLDRLANQH-NIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCRMNYVPEPDKIEAGVKILAEEIERAWRE..... 415
10 -5.230[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  10  12GDGRIYVGNLPTDREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYD--YGQCRLRV-------------PRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKL............................................................. 165
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.