current user: public
If you have questions about the server, please let us know.

Query: PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs, from PfamA32U

Results of PSI-BLAST search in nr85s
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .
# E-value Template Links and tools%idFirst SLRVQVAKSFFIMTFLGSFLCWVAFISSGLGLSLIFTLSLVFSQIYPAQNIAISASSRVFEPLRYLPVRFSERMLVVFFIDSINILAFATPTIAVLMVKNLYFGLYSLLWIIAAILLGYSMVFLYYALFGVKVRSGFSKSVLAGILFFAVLVFALRRFQEIPDLTPYLTPHLLLLSYAASSATIKLSTGRVWRSILNPEIVEVKGSSRLSSGSPLRAMLIKDFRLILRKNALFPLIVPLVIVMPNVVSIANMPNLSIFIITTISTLSTIDLRIIGNLENVDFLRMLPLSKRGFVMSKACLIFVISFAASLPAGSIAFIVSQNPFYLFMAFAIPAIVSMLSSLIIFWQKGEEIYFPEVGFLKWIGLLLVNFGAVYAVLSPRFILSQPVADIISSVLTLLAMTALFEKLast
1 1.000e-70UniRef50_O29125 Uncharacterized protein n=3 Tax=Archaeoglobus fulgidus TaxID=2234 RepID=O29125_ARCFU  ali  100  30SLRVQVAKSFFIMTFLGSFLCWVAFISSGLGLSLIFTLSLVFSQIYPAQNIAISASSRVFEPLRYLPVRFSERMLVVFFIDSINILAFATPTIAVLMVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRSGFSKSVLAGILFFAVLVFALRRFQEIPDLTPYLTPHLLLLSYAASSATIKLSTGRVWRSILNPEIVEVKGSSRLSSGSPLRAMLIKDFRLILRKNXXXXXXXXXXXXXXXXXXXXNMPNLSIFIITTISTLSTIDLRIIGNLENVDFLRMLPLSKRGFVMSKACXXXXXXXXXXXXXXXXXXXXXQNPXXXXXXXXXXXXXXXXXXXXXXXXKGEEIYFPEVGFLKWIGLLLVNFGAVYAVLSPRFILSQPVADIISSVLTLLAMTALFEK 435
2 2.000e-46UniRef50_C5A1U2 Uncharacterized protein n=4 Tax=Thermococcus TaxID=2263 RepID=C5A1U2_THEGJ  ali  22  40SLKRTLLSQSILFSFLGLILLPSVYYVKTVVYASYCMLPLIVALYGTAVTAQYAVSLGLFEPLLSLPVRVGGKYLSLLLITELPSLLLFPPAIALSLKXXXXXXXXXXXXXXXXXXXXHTLGLLIYDRLG--KTSGGRFSGLKTAFKAFGIILVMSLFYGMNYIQRYVSSHKYSIAYPFSVVTVXXTVRRLWRRISEGTTVERRGKAKLSLHSPALALALKDFKIASRNTXXXXXXXXXXXXXXXXXSGSEGSALGFVLAIGWTSSIAIDAVLKIDGRAFEVLHSLPLSPRTFLRGKLVTMTVVPVTAGLGAVLGLSLGNPSVVKVLPIALLLPVATAGTTLTVFYWGIREVALPETRWEK............................................. 440
3 2.000e-40UniRef50_B6YXB7 Hypothetical membrane protein, conserved n=9 Tax=Thermococcus TaxID=2263 RepID=B6YXB7_THEON  ali  21  73.............................IMFSTYAMLPFVMALYTTAVNASYTTSMGIFEPLKPLPIKTGAKYLSLLLIDNVPALVAMLPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFFGVDGRFSSLKTLARGVLLFISMFYALNYIQHYKELIPVFSRYSIAYPFSXXXXXXXXXXXRLWERMGENLKTSRTSKFRAKILSPVLALTMKDLRIIFRKSXXXXXXXXXXXXXXXXXKVSEWAVVSVLFMIAWMASVGIDTVLKIDGLEFEFLRSLPITLGQFVRGKLITMNAVPISAGVVLVLVASYLNPYLLKLVPAAIVLPLLTSSLAMTFFYHGEKELSLPETNF............................................... 441
4 8.000e-40UniRef50_A0A218P501 Uncharacterized protein n=3 Tax=Thermococcus TaxID=2263 RepID=A0A218P501_9EURY  ali  17  72............................AVLLATYALLPFVMALYTTTVNASYAVSMGIFEPLKPLPIKTGAKYLSVLLIDNVPAIVALIPAVLAMAYRSPVSXXXXXXXXXXXXXXXXXXXXXXXXXXGSSSVGGRFSKLVLGAILFIGMFYAINYVQHYEELLPFFSRYSVAYPFSIAVPTYRFILGKLWGRMEEGAAVSHVGSFKARTHHPVIAIALKDLRIAVRKXXXXXXXXXXXXXXXXXXEMGEWSVASVLLMIAWMASVGVDTVLKIDGREFEFLRSLPLTLGQFLRAKLLVMNAVPVTAGAGLVLAAAYIDPGALKXXXXXXXXXXXXXXXXXXXXYHGEKELSVPETN................................................ 440
5 2.000e-39UniRef50_I3RE88 Uncharacterized protein n=1 Tax=Pyrococcus sp. ST04 TaxID=1183377 RepID=I3RE88_9EURY  ali  16  41SLKLGVGLQSLAYLLFGAMFGIGVFMTKGIVFSSYLIVAFIMALYTTSLSSGYLLSSRAIDPLKPLPLRFNSIVSATLLLECLPAFFLLLPSALALKKXXXXXXXXXXXXXXXXXXXXXXXXXXXKFGGVHVGKGGIIKAIAKGQMFFIAIFFVLQLVSRFEYFAPVFQKYPIIFPMAATAFSYVYSIKKINEILEGIKVYGKAPEYSLSITSPILAFVQRDYKMIFRRNYLGAFLSPIGMSLYFIWNLFKDGFPLEETGLMIVVISSLDIVFKMEMEGLDILLNLPITKRQFLLAKALTISLSPLTFSIVFIVLASWSNGLSALYLLPLLSTPFLTSSIGVSYVGFKIEGVEIPELR................................................ 436
6 2.000e-39UniRef50_O58952 Uncharacterized protein n=2 Tax=Pyrococcus TaxID=2260 RepID=O58952_PYRHO  ali  17  40NIKLAVGLQSLAFMLLGFMIGLSIYLVRGILFAPNLIVPFIYSIYTTSLMVAYLKSGKVLEPLKSLPIRLGLILSVLILIDTLPGFFLLLPSTFFLGGIGEDXXXXXXXXXXXXXXXXXXXXXQVKFGGSYVGRGSILKNLAKGILLMISIYLLIQGIENVEMLTPIFKEYEVVFPMVASTIYXXXXXRRLWESLEVEKVEGVKVEYSIRSMNSLVSLVFKDYKIIFRRTXXXXXXXXXXXXXXXXXXXXXKEGFMLMITIGILASITLDAVFKMELEGFETLKSLPISKKRFLLTKGLVMSTIPIFLNLTLLALSLIFNGTKALYIFPLVLSPLLASGISMKYVSKKINDVEMPNLG................................................ 435
7 2.000e-37UniRef50_I6TWD9 Uncharacterized protein n=2 Tax=Pyrococcus furiosus TaxID=2261 RepID=I6TWD9_9EURY  ali  21  70.........................VQKAIFFSSYLIIPFILTLYSTSLATAYLLSSKAVEPLKPLPLGNLNFIVSLLLIENLPAFVFLIP--ASLALGNSIASLLGLLWICSTILMGHSLLFLQIKFSGIHVGKGSVVKTLAGFLIIAGIYFIVQALMRILEIAPIFRKYFIAFPFAASLALYFYDLKRLGEVLEGIKTYGKATKYKLTVANPVTAMFRKDYRIIFRKPYLGTFLSPLLMSIYFIYNLAKEGXXXXXXXXXXXXXXXXDPAFAMDREVFPFLSSLPIKRREYLLGKMLTVSLSPLTFSAILVLLSCAFNGTEALLLIPFLASPFSSIGILYVKHKMGNERIELPVLK................................................ 438
8 6.000e-37UniRef50_F4HKB4 Uncharacterized protein n=3 Tax=Thermococcaceae TaxID=2259 RepID=F4HKB4_PYRSN  ali  15  40.IKYAVGLSSLAYFFFGFMIGISIYSVRGIVFASNLIVPFIYAIYTTSLMVAYLKSGGVFEPLKPLPIRXXXXXXXXXXXXXXXXXXXXXXXXXXXGGITPRXXXXXXXXXXXXXXXXXXXXFQVKFGGTTIGKGSLIKNLAKGVLLIIGMFLVIQALENVEKLAPIFLEYEIAFPMSASTVYDTYXXKELWKSLEEEKVTGEKLEYSIKPRKLPFALVEKDMKMIFRRTQXXXXXXXXXXXXXXXXXXXXKEGFLLMSVIGIFSTFALDAIFRLEIEGFETLRTLPITKREFLLAKGXXXXXXXXXXXXXXXXXXXXFNGSGALFLAPLIFTPLLNSGISIRYIKRKIKDVDMPN.................................................. 432
9 9.000e-36UniRef50_F8AFC8 Uncharacterized protein n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) TaxID=529709 RepID=F8AFC8_PYRYC  ali  22  36SILWSVGLQSIVYLGLGAMLGASIYFAKAVIFASYLLLPFIISLYTSTLNVSYAVSMGIFEPLKPLPVKSSPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHSLGLFIYVHFGTIHVRRSILKNIGKGILLIVGIYYVIRFMEDYIEYEPLKSIGLLTLYMAFSLALYIYTLRRVWEAVSEPRVVGKTGEFRLSVKEPVVAVALKDLKTVFRRSQLLAFLVPVYVVFYPLYQAISSGTLLVLLIVSLLTSMLSDAALKLEAEGFEFLRTLPLQRETFLMGK............................................................................................................. 369
10 3.000e-35UniRef50_F0LKG1 Uncharacterized protein n=4 Tax=Thermococcaceae TaxID=2259 RepID=F0LKG1_THEBM  ali  24  91...............................................TVQSSYVVSLGLFEPMKSLPIRIGALYLSELLIDQIPALAMILPSIAVVSMRYPLNXXXXXXXXXXXXXXXXXXXXXXXSTFGLRISRKSRSGSLKNLLKILAIFAFMGLFYGVSYMQGYIQEHSYSIAYPFTISSIFDPXKRVWSGILEPKLESEKTKFRASLGGKVLNLTLKDLKIIFRKTAMITFLMPIYVLLPQILMTIQSGNLSIMFILGVFTIPGADAVLKVEGKVLDFLKSLPLTKREYALSKXXXXXXXXXXXXXXXXXXXXXXDPKALILFPIFLLPLNASFLTMAYFFRYEEVELGIPE.................................................. 442
11 3.000e-33UniRef50_A0A256Y2F8 Uncharacterized protein n=1 Tax=Archaeoglobales archaeon ex4484_92 TaxID=2012529 RepID=A0A256Y2F8_9EURY  ali  23  65........................YVISTLSVTLTLI-TFVFTFYATAVNSSHAISMGVFEPLKFLPLRIQSSYLSQLLIDSIPCFAASIPTISIIATKYPVQXXXXXXXXXXXXXXXXXXXXXXXXXXGVRVKVGFLRATLKGLILFVGGFYALSYFQRYSEFAQTFWKYSIFFPFSASVLLYNFALKKVWFGIYEPKVFSENAKFKAGFGGQMTSLVKKDLRLVFRKVSXXXXXXXXXXXXXXXXXXXXKTGLNLVCMISFFSSVNADIVLRVESKEVEFLRSLPLKKSDFVIGKXXXXXXXXXXXXXXMVGISSLYDTTSILLPHSIFLPLATSLLTMYLLYRYGSEEIGIPE.................................................. 438
12 1.000e-25UniRef50_A0A257A7K2 Permease n=1 Tax=Euryarchaeota archaeon ex4484_178 TaxID=1978126 RepID=A0A257A7K2_9EURY  ali  27  38SMWRGLGHQSISYVFLGLFSAMGIAFTXXXXXXXXXXXXXXXXXXXXXXXGTNVVYMGIFEPMKMLPVKIGSKYLSLYLLAEIPSFVIVLPTSIVIMMKYPLEXXXXXXXXXXXXXXXXXXXXXXXNFFGLKIRQRAGKETXXXXXXXXXXXXXXXXXXXXXXXQDYIKEHSYSIVYPFSXXXXXXXXXRIWGRIIEPRIVSEKVEFKAEKMSPIRALFIKDFKILLRKXXXXXXXXXXXXXXXXXXXXXESQLLATIFMLGVFAATGTDAILKLESMSLDFLRTLPLRKRDFVSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPLPMLLPPISASVSMLYYFRYKGEEIGIPDLK................................................ 444
13 3.000e-25UniRef50_UPI00064F99BF hypothetical protein n=1 Tax=Palaeococcus ferrophilus TaxID=83868 RepID=UPI00064F99BF  ali  19  39SMKSGLGYQSLAFLGFGLFYAGSVLLAKTDXXXXXXXXXXXXXXXXXXVHASHVVSMGIFEPLKPLPLRVGSLYLSELLLLEIPTFSITAPSVLALMVRAPVTGXXXXXXXXXXXXXXXXXXXXXXRTFGMRVRGGTLRNFLKILGILAYMGMFYAFSYGQEYMRAHSEEGRYSLAYPFTLSSVFHPFPSMXNRALEPEVETEKTPFRAAGGGAIRALVAKDVKILFRRXXXXXXXXXXXXXXXXXXXXXXREGLLYLFIVGFTSTAGADGVLKLESLSIGFLRTLPLNKGHYARSK............................................................................................................. 379
14 1.000e-24UniRef50_C6A4E6 Uncharacterized protein n=8 Tax=Thermococcales TaxID=2258 RepID=C6A4E6_THESM  ali  24  36SLKRGLGVQTFGFIPFGLLMASTFVFTNXXXXXXXXXXXXXXXXXXXXXQASYVLSIGLFKPLEALPIRLGSKYLSGLLFLEIPALGVILPSVFVIMAKYPLEXXXXXXXXXXXXXXXXXXXXXXXXXFALKVHQRAGKGTLKSLVKAVFFLLFIGMFMAMNYLQYYIREHSYFIAYPFSVASIFEPXRAVWKKILEPPVVSEKSKFKAKITNKLLALTLKDFRMFVRKPAMLAFLIPLYMVLPTIVDAFRKGQXXXXXXXXXXXXXXXXXXXKVEGNVLELLKTLPIRKREFMLSK............................................................................................................. 379
15 4.000e-22UniRef50_W0I6F4 Uncharacterized protein n=1 Tax=Thermococcus paralvinellae TaxID=582419 RepID=W0I6F4_9EURY  ali  23  90................................................LNVPALISLKLFEPLKSLPIKIGSKYLTHXXXXXXXXXXXXXXXXXXXXYKNFIAGVLSFLWLFLSLFFGHALGLAISDVFSLKVSTKPGKELLRIIAFLERVYPVVARYQALTIFEPEKXXXXXXXXXXXXXXXXXXXXKRVWDKILEPPVISQKVKFKASPTRKSLALVIKDFKLAFRKXXXXXXXXXXXXXXXXXXXXXXXDSEDSFVVDGTFIIFSMTLTGEIQIEGLQFLKTLPLRKFDLIISKAIDMSIVPILVNIAIVLFVSLHDRXXXXXXXXXXXXXXXXXXXXXXXXRYGSEELWFPELKW............................................... 447
16 2.000e-20UniRef50_Q5JDA6 Hypothetical membrane protein, conserved n=1 Tax=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) TaxID=69014 RepID  ali  17  36.LKKTLLFQTAMYAVFGLMLFPSLKGERXXXXXXXXXXXXXXXXXXXXTNSSYIASLDLFKPLLPLPIKLGGRYMSVLLLESLPVMAFMVPG-AVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYYSFGKTSSGRFADLKSLAKALGVILIFGLFYGFSYFQDYVSLGGYEFIYPLSVLSVXXXXXXXXXRISEGSYTSRRRAGGLGVYPPELALMVKDFKTALRNTXXXXXXXXXXXXXXXXXXGGRLATITFVAALGWVSAVSVETLTKIEVKSFELLLSLPLERGRFLRGKXXXXXXXXXXXXXXXXXXXXXGFSSPIYLPMAVLVPLATCGIALHVY-YHGTEGLALPQGGILK............................................. 441
17 2.000e-19UniRef50_B5IFK9 Uncharacterized protein n=3 Tax=Aciduliprofundum TaxID=379546 RepID=B5IFK9_ACIB4  ali  25  38SMKKGIGYQFLSYLLFGLFSGMSIFVISSVXXXXXXXXXXXXXXXXXXXQGSNVVYMGVFEPLKPLPIKLGSKYLSYLLLEILPSLGIVLPTSIVISLKYPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIKQRAGKSXXXXXXXXXXXXXXXXXXXXFVYMQRYIMEHSYSIMFPFSSGTIFHPXXXXXXRIMEPRVVGEKGEYKIKSSSALFTLIGKDMKVLIRRTXXXXXXXXXXXXXXXXXXXXXXTGXXXXXXXXXXXXXXXDSVLKIDINAIEFLRTLPLKKKDFVMGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYFHYKEEDIGIPDLK................................................ 444
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.