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Query: gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLYLDGETLTIEDIKSFLQQQSKIEIIDDALERVKKSRAVVERIIENEETVYGITTGFGLFSDVRIDPTQYNELQVNLIRSHACGLGEPFSKEVALVMMILRLNTLLKGHSGATLELVRQLQFFINERIIPIIPQQGSLGASGDLAPLSHLALALIGEGKVLYRGEEKDSDDVLRELNRQPLNLQAKEGLALINGTQAMTAQGVISYIEAEDLGYQSEWIAALTHQSLNGIIDAYRHDVHSVRNFQEQINVAARMRDWLEGSTLTTRQAEIRVQDAYTLRCIPQIHGASFQVFNYVKQQLEFEMNAANDNPLIFEEANETFVISGGNFHGQPIAFALDHLKLGVSELANVSERRLERLVNPQLNGDLPAFLSPEPGLQSGAMIMQYAAASLVSENKTLAHPASVDSITSSANQEDHVSMGTTAARHGYQIIENARRVLAIECVIALQAAELKGVEGLSPKTRRKYEEFRSIVPSITHDRQFHKDIEAVAQYLKQSIYQTTACHLast
1 -137.000[E] COG2986 Histidine ammonia-lyase  ali follow..  38  3.TITLRPGQMTLADLRHIYQHPVHITLDESAYVPIQQSVDCVQAILAEQRTAYGINTGFGLLASTRIATEDLENLQRSIVLSHAAGVGEANDDAIVRLIMVLKINSLARGFSGIRLEVIQALITLVNAGVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKARYQGEWLPAHTALAQAGLQPLTLAAKEGLALLNGTQVSAAYALRGLFEAEDLYAAASVFGCLTVDAALGSRSPFDARIHAVRGQRGQIDAASTYRHLLGERSEISEKNCDKVQDPYSLRCQPQVMGACLGQIRQAAEVLAIESNAVSDNPLVFAE--QGDVLSGGNFHAEPVAMAADNLALALAEVGSLSECRISLMMDKHMSQ-LPPFLVENGGVNSGFMIAQVTAAALTSENKGLAFPASVDSIPTSANQEDHVSMAPRAGKRLWEMAENVRNILAIEWLAACQGLDLRKGLRTSAILEPARQLLRQHVTYYDKDRFFAPDIEVASQLIAQRHMNELMP. 503
2 -125.000[Q] KOG0222 Phenylalanine and histidine ammonia-lyase  ali follow..  29  43.TVQLGGETLTIGQVAAVASGGPTVELSEEARGGVKASSDWVMESMNRDTDTYGITTGFGSSSRRRT--DQGAALQKELIRYLNAGISNTLPRPATRAAMLIRVNTLLQGYSGIRFEILEAITTLLNCKITPLLPLRGTITASGDLVPLSYIAGFLIGRPNSRSVGILTALEAFKLAGVSSFFELRPKEGLALVNGTAVGSALASTVLYDANILVVFSEVASAMFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEALHDRYVLGYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVS--RNKAIHGGNFQGTPIGVAMDNTRLALASIGKLMFAQFTELVNDFYNNGLPSNLSRNPSLDYGLKGAEVAMASYCSELQFLANPVTNHVESASQHNQDVNSLGLISSRTTAEAVVILKLMSTTYLVALCQAFDLRHLEILKKAVNEVVSHTAKSVLAIEPFRKHDDILGVVNREYVFSYVDDPSS. 569
3 -5.780[J] COG0087 Ribosomal protein L3  ali follow..  14  1MTKGILGRKIGMTQVFAENGDLIPVTV-------IEAAPNVVLQKKTAENDGYAIQLGFDDKREKLSNKPEKGHVAKRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKG---------------QGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRV-FKGKLLPGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVK................................................................................................................................................................................................................................................................................................... 207
4 -4.850[S] COG2106 Uncharacterized conserved protein  ali follow..  12  1.............................................................MLSIAIPSSALINERDEKIKTYKVG-------LIARAAAVFRVDEII--YYDPILDESDFIAEILEYLETPIFPLKKSLKYAGLLPPL-----------------------AIPSHRSKHLKVGELREGV-VRHVAPDGTRWVDVGIDALAPMKSDAEKGARVTVRI--CSKTPLRVEEAEPQEYWGRVKKLRLEELVKRKNLVVTSRKCEVVKPPALRRDVTLVFGNPEEGVFEIAKRLGVEMEAECWNVV----------------QGTKTVRLEEAIFATLSLVNFADYWGGLE.................................................................................................................................................. 256
5 -4.690[H] COG1239 Mg-chelatase subunit ChlI  ali follow..  11  13..........TLGELLQTPEYAGRKPFDGQRRLVQDEVRDNLTRKLRSGEELFPGVVG------------------------------DDTVIPQLVNALLARQNFILLGLRGQKSRILRAITELLDPEV-PVI--DGVDMPDDPLNPIGAEGQHLLEAHGMELPIRWLPRADRYVEKLATPDVTVAD-------------------------LIGDVDPIKAARLGTSLGDTRSM---------HFGLLPRAN--RGIFAVNEL---------------DLSPKVQVALFNILQ--EGDVQIK---FSANPEDYTAR------------GKIVTPLKDRIGSEIRTHYPTDVQLGMDITAQEAV------KEEGVVVPPFIAELIEDIAFQAREDGRIDKLSGVSQRLPISLMELACANAERRSLVSGDAPVVRVTDVYAGLPAITGKMELEYEGELKGADNVAKDLIRKAAGAAYARSYGSADTRELEKWFDQGNVFRFPQ. 414
6 -4.250[H] KOG2599 Pyridoxal/pyridoxine/pyridoxamine kinase  ali follow..  10  6VKFIGNKRVLSIQSSVSHGYVGNRSATFPLQLHEW--------EVDVVPTVHFSNHLGYGATRGSACIPEEVHDLLNALLQD-----------------NGIVYDAILTGFVP-NHDIIQVIFDCVLA-LDPVMGDQGKISTYKAMIPHAFAITPNAFEVEILTDIVIHTQMDAKRGLEKIYQLYGIQN--AIITSFEVEESPGTLFCMGYSCEHGKPQLFLYQF------------PSLSGVFTGTGDLFSGLLLAKYREELDKRKHQQSDETKQTKRPTVLACAVGQVLSCMHTV............................................................................................................................................................................................................... 279
7 -4.240[O] KOG0360 Chaperonin complex component, TCP-1 alpha subunit (CCT1)  ali follow..  10  1MSQLFNNSRSD------TLFLGGEKISGDDIRNQNVLATMAVANV---------VKSSLGPVGLDKM----VDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGIASELLKRANELVKNKIHPTTIITG-------------------------FRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMV--VDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECITSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRT--LESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAI------AEFAAALLIIPKTLAVNA....... 466
8 -4.190[S] KOG4507 Uncharacterized conserved protein, contains TPR repeats  ali follow..  13  522YFLPPENKGLRIHELSSDDYSTEEEAQTPDCSITDFRKSHTLSYLVKELEVRMDLKAKMPDDHARKILLSRINNYTIPE-EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN------------------LAPLQYQDVPLVNLANLLIHGLHLDATKLLLQA----LAINSSEPLTFLSLGNAYLALKNIALEAFRQALKLTTKCPECENSLKLIRCMQFYPFLYNITSSVCSGNCHEKTLDNSRDKQKYFDNSQSAAEEEPSERGTEEDPVFSVENSGRDSDALRLESTVVEESNGSDEMENSDETKMSEEILALVDEFQQAWPLEGFGGALEMKGRRLDLQGIRVLKKGPQDGVARSSCYGDCRSEDDEATEWITFQVKRVKKPKGDHKKTPGKKVETGQIENGHRYQ---------------------ANLEITGPKVASPGPQGLLDWKTRKVP.............................. 956
9 -4.020[E] COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis  ali follow..  11............................ADVLPTNARQLESAREQLLALFRVHGY--------------ELVQPPLMEYAHSLLTHIDAGLSLKTILVQLGIR--------ADITPQVARIDAHLLSANQGINLCYAGPVDGLLNMREPLQAGAEMYGFADIRGDIELIDMLKSMKIADMGKVLLSLGH-IGIFRALSDAAHLDAGQSATLLALMQDKDTETVEAQVKAWKLDGMWAKAFSLLPRLYGGREVLSDARGRLPDLSAVGGALGELQADLSELRVDNYHTGLLYA---------------------AYAADFHDAVARGGRYDATGFSFDLRSFIGRLPAIER.......................................................................................................................................................... 325
10 -3.930[T] KOG4603 TBP-1 interacting protein  ali follow..  13  1..........................................................................................................MSKGRAEAAAGAAGILLRYLQEQNRPYLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQ-------------DQFDMVSDADLQVLDGVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYR---------ERLKNIKAATNHVTPEEKEQVYRERQ-RMATELSDAILEGYPKSKKQFFEEVGIETDEDY............................................................................................................................................................................................... 210

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.