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Query: gi|15923004|ref|NP_370538.1|(removed signalp:1-32) hypothetical protein (SAV0014) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SLIALIASIVLVVMIIVSIILFRQALMKMDSYVDGLSAQISTTNNKAIKHLPIGIIVLDENDHIEWVNQFMTNHMEANVISESVNEVFPNILKQLDRVKSVEIEYNQYHFQVRYSENDHCLYFFDITEQVQTNELYENSKPIIATLFLDNYDEITQNMNDTQRSEINSMVTRVISRWATEYNIFFKRYSSDQFVAYLNQKILADLEESKFDILSQLREKSVGYRAQLTLSIGVGEGTENLIDLGELSQSGLDLALGRGGDQVAIKSINGNVRFYGGKTDPMEKRTRVRARVISHALKDILAEGDKVIIMGHKRPDLDAIGAAIGVSRFAMMNNLEAYIVLNETDIDPTLRRVMNEIDKKSELRERFITSDDAWDMMTSKTTVVIVDTHKPELVLDENVLNKANRKVVIDHHRRGESFISNPLLIYMEPYASSTAELVTELLEYQPTEQRLTRLESTVMYAGIIVDTRNFTLRTGSRTFDAASYLRAHGADTILTQHFLKDDVDTYINRSELIRTVKVEDNGIAIAHGSDDKIYHPVTVAQAADELLSLEGIEASYVVARREDNLIGISARSLGSVNVQLTMEALGGGGHLTNAATQLKGVTVEEAIAQLQQAITEQLSRSEDALast
1 -85.6005xsi_A mol:protein length:343 Phosphodiesterase acting on cyclic dinucleotides  ali model follow..  99  2.........................................................................................................................................................................................................................................................................................SMRTRVRARVISHALKDILAEGDKVIIMGHKRPDLDAIGAAIGVSRFAMMNNLEAYIVLNETDIDPTLRRVMNEIDKKPELRERFITSDDAWDMMTSKTTVVIVDTHKPELVLDENVLNKANRKVVIDHHRRGESFISNPLLIYMEPYASSTAELVTELLEYQPTEQRLTRLESTVMYAGIIVDTRNFTLRTGSRTFDAASYLRAHGADTILTQHFLKDDVDTYINRSELIRTVKVEDNGIAIAHGSDDKIYHPVTVAQAADELLSLEGIEASYVVARREDNLIGISARSLGSVNVQLTMEALGGGGHLTNAATQLKGVTVEEAIAQLQQAITEQLSRSEDA 343
2 -63.8005o1u_A mol:protein length:338 Phosphodiesterase  ali model follow..  21  2................................................................................................................................................................................................................................................................................................SGSGMDEIVKVLSQHDRILVVGHIMPDGDCVSSVLSLTLGLEKLGKEVKAAV--DYKIPYVFEKFPYIDKIEENPN------------FDPELLVVVDASSPDRIGKFQDLLDKVPSVVIDHHSTNTNFGN---WNWVDPSFAATAQMIFRINKALG--VEYDSNLATLNYLGIATDTGFFRHNADVRVFEDAYKLVKMGADAHFVAKEILERFEQFKLFAEVLERLQLLNGKIAYSYIDYDTYLRHNDSAGFVGELRSIRGVEVAVLFMEFPRGKIHVSMRSKDWFNVNEVAFELGGGGHPRAAGVTFEGKKIEEVIPRVINHLLKKFKEGVES 325
3 -62.2005cet_A mol:protein length:341 Bifunctional oligoribonuclease and PAP phosphatase NrnA  ali model follow..  20  2........................................................................................................................................................................................................................................................................................VDGRRRAGARVDAVGAAALLSAAARVGVVCHVHPDADTIGAGLALALVLDGCGKRVEVSFAAPATLPESLRSLPGCHLLVRPE----------VMRRDVDLVVTVDIPSVDRLGAGDLTDSGRELLVIDHHASNDLFGT---ANFIDPSADSTTTMVAEILDAWG--KPIDPRVAHCIYAGLATDTGSFRWASV-RGYRLAARLVEIGVDNATVSRTLMDSFTWLPLLSRVLGSAQLVVGGRGLVYVVVDNREWVAEVESIVDIVRTTQQAEVAAVFKEVEPHRWSVSMRAKT-VNLAAVASGFGGGGHRLAAGYTTTG-SIDDAVASLRAALGLTRAPPPPP 336
4 -62.1003w5w_A mol:protein length:351 Putative exopolyphosphatase-related protein  ali model follow..  20  2...........................................................................................................................................................................................................................................................................................LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVI--VPNAFPDFLKWMPGSKDILLYDR---YQEFADKLIMEADVICCLDFNALKRIDEDIVAASPGRKIMIDHHLYPEDFCR---ITISHPEISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYSNNREIYFIISELLSKGIDKDDIYRKVYNTESRLRLMGYVLSNMKVYDYNSALISLTKEEQGKFDDSEGFVNIPLSIKNVCFSCFLREDTEKMIKISLRSVGKFPCNRLAAEFNGGGHLNASGGEFYG-TMEEAVKVFEQALEKYKPLLKEL 344
5 -61.8004ls9_A mol:protein length:341 DHH family protein  ali model follow..  21  15.......................................................................................................................................................................................................................................................................................TGPDAQIAGARVDARGAADLLTAASSVSVICHVYPDADTIGAGLALAQVLAASGKHVEVSFATPAQLPESLQSLPGGHLLVAPE----------AMRRDADLVVTVDIPSINRLGASGLAGPGREVLVIDHHASNQLFGT---ANYIDPSADSTTMLVAELLDAWG--KPIDEKVAHCLYAGLTTDTGSFRWATA-RAHRLAARLVELGVDNASISRTLLDTFAWLPMLSRVLATARLLPDGRGFVYAVVPHDEWSEEVESIVDIVRTTQQAEVAAVFKEIEPMHWSVSMRAKS-VNLASVASAFGGGGHPHAAGYSATG-SADDVVQALARAL.......... 340
6 -61.3003dev_A mol:protein length:320 SH1221  ali model follow..  19  1................................................................................................................................................................................................................................................................................................MVEIFNEIMQRVKEAETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGE--AEPSLSFIGDLDEID-------------DSVYSDALVIVCDTANAPRIDD-QRYLNGQSLIKIDHHPATDQYGD---VNFVNTEASSTSEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLFNTSPHTMEVASQLLAYPFNHNAELNKMSEDPKLMPFQGYVLQNFELSSHEYCQIKITNDVLKQFDEASQFVNTVADISGLKIWMFGVD-EGDQIRCRIRSKG-ITINDVANQFGGGGHPNASGVSVYSDEFEELAQALRQKLLE........ 314
7 -60.5005ipp_A mol:protein length:333 Bifunctional oligoribonuclease and PAP phosphatase NrnA  ali model follow..  20  1.....................................................................................................................................................................................................................................................................................MGSSENLYFQSMASMKTELIRTISLYDTIILHRHVRPDPDAYGSQCGLTEILRETYPEKNIFAVGT--PEPSLSFLYSLDEVD-------------NETYEGALVIVCDTANQERIDD-QRYPSGAKLMKIDAHPNEDPYGD---LLWVDTSASSVSEMIYELYLEGKEGWKLNTKAAELIYAGIVGDTGRFLFNTTEKTLKYAGELIQYPFSSSELFNQLYEKLNVVKLNGFIFQNVSLSENGAASVFIKKDTLEKFGEASQLVGTLGNISGIRAWVFFVE-EDDQIRVRFRSKG-PVINGLARKYNGGGHPLASGASIYSDEADRILADLETLCKEH....... 326
8 -42.3001i74_A mol:protein length:309 PROBABLE MANGANESE-DEPENDENT INORGANIC PYROPHOSPHATASE  ali model follow..  14  1...............................................................................................................................................................................................................................................................................................................SKILVFGHQNPDSDAIGSSMAYAYLKRQLGVDAQAVALGN--PNEETAFVLDYFGIQ------APPVVKSAQAEGAKQVILTDHNEFQQSIAD--IREVEVVEVVDHHRVAN-FETANPLYMRLEPVGSASSIVYRLYKENG--VAIPKEIAGVMLSGLISDTLLLKSTTHASDPAVAEDLAKIGVDLQEYGLAMLKAGTNLALVDIDAKTFELNGSQVRVAQVNNEVLERQNEIEEAIKASQAANGYSDFVLMTDILNSNSEILALGNNTDKVEAAFNFTLKNNHAFLAGAVSR-------KKQVVPQLTESFNG.... 309
9 -39.9004rpa_A mol:protein length:317 Probable manganese-dependent inorganic pyrophosphatase  ali model follow..  15  2...............................................................................................................................................................................................................................................................................................................AKTYIFGHKNPDTDAISSAIIMAEFEQLRGNSGAKAYRLGDVSAETQFALDTFN---------VPAPELLTDDLDGQDVILVDHNEFQQSS--DTIASATIKHVIDHHRIANFETAGP-LCYRAEPVGCTATILYKMFRERG--FEIKPEIAGLMLSAIISDSLLFKSTCTQQDVKAAEELKDIKVDIQKYGLDMLKAGASTTLLNMDAKSFTMGDYVTRIAQVNDEVLNRKEDLEKEMLAVSAQEKYDLFVLVVDIINSDSKILVVGAEKDKVGEAFNVQLEDDMAFLSGVVSRKKQIVPQITEALTKLE......... 311
10 -39.8002enx_A mol:protein length:310 Manganese-dependent inorganic pyrophosphatase  ali model follow..  14  1...............................................................................................................................................................................................................................................................................................................SKILVFGHQNPDSDAIGSSVAFAYLAKEAWGLDTEAVALGTPNEETAYVLDYFG-------VQAPRVVESAKAEGVETVILTDHNEFQQSISD--IKDVTVYGVVDHHRVAN-FETANPLYMRLEPVGSASSIVYRMFKENG--VSVPKELAGLLLSGLISDTLLLKSTTHASDIPVAKELAELAVNLEEYGLEMLKAGTNLELIDIDAKTFELNGEAVRVAQVNNDILARQEEIEVAIQEAIVTEGYSDFVLMTDIVNSNSEILALGSNMAKVEAAFEFTLENNHAFLAGAVSRKKQVVPQLTESYNA........... 310
11 -38.4001k23_A mol:protein length:309 Manganese-dependent inorganic pyrophosphatase  ali model follow..  15  2...............................................................................................................................................................................................................................................................................................................EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQ---------VNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSI--KDIEEVQVLEVIDHHRIAN-FETAEPLYYRAEPVGCTATILNKMYKENN--VKIEKEIAGLMLSAIISDSLLFKSTCTDQDVAAAKELAEIGVDAEEYGLNMLKAGADLSLISLDAKEFTLGSKKVEIAQVNEDVKKRQAELEAVISKVVAEKNLDLFLLVIT--DILENDSLALAIGNEAAKVEKAFNVTLE----NNTALLKGVVSRKKQVVPVLTDAMAE.... 309
12 -37.5001k20_A mol:protein length:310 Manganese-dependent inorganic pyrophosphatase  ali model follow..  14  1...............................................................................................................................................................................................................................................................................................................SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFG-------VAAPRVITSAKAEGAEQVILTDHNEFQQSVAD--IAEVEVYGVVDHHRVAN-FETANPLYMRLEPVGSASSIVYRMFKEHS--VAVSKEIAGLMLSGLISDTLLLKSTTHPTDKAIAPELAELGVNLEEYGLAMLKAGTNLALIDIDAKTFELNGNNVRVAQVNAEVLERQAEIEAAIEKAIADNGYSDFVLMTDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSR-------KKQVVPQLTESFN..... 309
13 -36.6001wpp_A mol:protein length:311 Probable manganese-dependent inorganic pyrophosphatase  ali model follow..  13  2...............................................................................................................................................................................................................................................................................................................SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFG-------VAAPRVITSAKAEGAEQVILTDHNEFQQSVAD--IAEVEVYGVVDHHRVAN-FETASPLYMRLEPVGSASSIVYRMFKEHG--VAVPKEIAGLMLSGLISDTLLLKSTTHPTDKVIAPELAELGVNLEEYGLAMLKAGTNLALIDIDAKTFELNGNNVRVAQVNAEVLERQAEIEAAIEKAIADNGYSDFVLMTDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA........... 311
14 -35.8002eb0_A mol:protein length:307 Manganese-dependent inorganic pyrophosphatase  ali model follow..  15  2.................................................................................................................................................................................................................................................................................................................RYVVGHKNPDTDSIASAIVLAYFLDCYPARLGDI------NPETEFVLRKFG-----------MEPELIESAKGKEIILVDHSEKSQSFDD--LEEGKLIAIIDHHKVGLTTTEP--ILYYAKPVGSTATVIAELYFKDAIDLELKPDLAGLLLSAIISDTVLFKSTTTDLDKEMAKKLAEIAGISNIEELKAKSVVGKLKPEEIINMDFKNFGKKVGIGQVEVIDVSKKEDIYKLLEEKLKNEGYDLIVFLTDIMKEGSEALVVGNKEMFEKAFNVKVEGNSVFLE--------GVMSRKKQVVPPLERAYN..... 306
15 -25.2002m1c_A mol:protein length:113 DHH subfamily 1 protein  ali model follow..  28  3...................SHMRSLHKELQQYISNLSYRVKKVSEEALMQMPIGILLLDEEDKIEWSNRFLAACFKQTLIGRSLAELSEPLAAFVGKTDEEIIELNGKQLKVIVHRHERLLYFFDVT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 113
16 -17.4005yh1_A mol:protein length:441 Member of s1p family of ribosomal proteins  ali model follow..  12  30.....................................................................................................................................................................................................................................................................................KSEVLEALKPKIMKAAFMIRRAIFEGRPIILRHHA--DTDGYTAGVALETAIIPLIEKVAPDPEARWHLFKRRP--PFYELEDVLKDIIFMMEDHMRFGDELPLVVIVDGTTEDIPAYKRLKAYGVKIVVIDHHDPRDWISEDKAKVHVNPHHVTAGMLATEVARYINPE--VEDRIKHLPAIAGTGDRSKAPEFYQEEILLITGNLQRHRMLVEGIYPEVKEKQEKVLKAVLPHVKSVVLPNGIRFNTIDVELYAPKKLSGIIHDHFKEQYGEDSPILTLAYGPDFAVVDGMAKYNFDLNKIVKILEGGGHSYAGSIKFFEGKRKEVLEAFAKEVLKLKAGE... 441
17 -16.5002qb6_A mol:protein length:397 Exopolyphosphatase  ali model follow..  14  2.....................................................................................................................................................................................................................................................................................SPLRKTVPEFLAHLKSLPISKIASNDVLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFRDVMYVLEKLKIKEEELFFIEDLKSLKQNVSQGT-SYLVDNNDTPKNLKN----IDNVVGIIDHHFDLQKHLDAEPR-IVKVSGSCSSLVFNYWYEKLQGDREVVMNIAPLLMGAILIDTSNMRRKVEESDKLAIERCQKNDIKGFSVSDILKKDYKQFNFQGKGHKGLEIGLSSIVKRMSW-NEHGGEADFVNQCRRFQAERGLDVLVLLTSDSNVVRELIERVSDKLQLQLFGGNLDGGVAM------FKQLNVEATRKQVVPYLEEAYSNLEE. 397
18 -14.9005x4h_A mol:protein length:500 Uncharacterized protein  ali model follow..  15  1.......................................................................................................................................................................................................................................................................MSYYLESTSLYKKAGSHMDKEGFLNVREAVDVVKLHIELGHTIRIISHR--DADGITSAAILAKALGREGASFHISIVKQVSEDLLRELKD----------------------EDYKIFIFSDLGS-GSLSLIKEYLKEKTVIILDHHPPENVKLEEKHI-LVNPVQFSGSGVTYFFARELNEKLRLFGRETRPLYQMLAYATNPEIPEVTGDERKAIEWLKNKGFNPEKKYWELSEEEKKKLHDFLIIHMIRLNLGNLGVAVCLGDEEAFRKALKMVEDY--TLVGIAASMAITDEDPNLLKGSARTTERYNLGEALRKAAGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVSKGG.. 489
19 -14.9006eib_A mol:protein length:163 Sensory box/GGDEF family protein  ali model follow..  13  12.........................................................................................................................KLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKGDEVLCFLAKLFQSVISDHH-FCGRVGGEEFIIVLENTHVETAFH----LAEQIRQRFAEHPFHIYLCAGVSSGDHDIADIYRRSDQALYKAKRNGRNRCCIYRQSTE................................................................................................................................................................................................................................................................................................................................................................. 163
20 -14.8002qv6_A mol:protein length:268 GTP cyclohydrolase III  ali model follow..  14  59.........................................................................AITNGIDLITHKRIQESIRNRYPFTVSMVIASAETPYEATLQEYGSAQDENRKEVLDVANELVVDGYVQIAHIDINNITGTLDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPSNGMSEEDFLD----IFNRINK-----KYKIELKAGIGIG-RTAEDASNLADIGLEKIRGKLVDKNVCTLKQDD................................................................................................................................................................................................................................................................................................................................................................. 252
21 -14.6004zve_A mol:protein length:172 Diguanylate cyclase DosC  ali model follow..  18  12.........................................................................................................................FLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSD-YVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLGEDIALSLSIGAAMGHPDYERLIQIADEALYIAKRRGRNRVELWKAS................................................................................................................................................................................................................................................................................................................................................................... 163
22 -14.5005ghr_A mol:protein length:477 SsDNA-specific exonuclease  ali model follow..  17  9...............................................................................................................................................................................................................................................................................................RVREGAELIKMHIELGHTIRLISHR--DADGITAGAILAKAVAREGGTFQLSIVKQVSEELIDQLAR----------------------EKREIYVFSDLGS-GSIELIEEKLNFATVVVADHHPPEKDSFSTDSHVLVNPVPFSGSGVAYFVAREMNRKLRLFGRESRPLYQMLAYATNPEIPEITGDERKAIEWLRAKGFDPEMKYWQLREEEKRKLHEANATGRLNAGTLGVAICLGDEEAYKVARKMLDDYKKEQTLVGIAANMAISDEDENLVKGSARTTEKALLKEVAEKLGGGGHAIAAGIRFPKNRIDEFIKLFNEALGRQVKGGG.. 472
23 -13.8005euh_A mol:protein length:172 Putative GGDEF domain membrane protein  ali model follow..  14  14.........................................................................................................................MLDQSLRHEWFRAQRSGKPLSLLMIDADHFKAFNDRHGHQAGDQALRELARVITTNVRRPADLVARYGGEEFSVILAETDSVGAQQIAEHIRAAVEQLSSVNEDQMTVSIGISTSEISLEQLLFAADKALYQAKEGGRNRVVVAALE................................................................................................................................................................................................................................................................................................................................................................... 166
24 -13.6005xgb_A mol:protein length:568 Uncharacterized protein  ali model follow..  11  1.............................RQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPAAEQMTNDKARGLPLASLFRSKLVLRHDGSSVPVTLVGAPIHRGAEITGVVLVLHDMTRERQYMARLSSGRHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGD-TLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHSGQPFNCTVSVGLVHGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDV-----------ELSMRFGEMTWVQRIHLALEEDRFSLYAQPIVPLGEGAEEGLHVELLLRLRDEGGRLVPPLS----------------------FIPAAERYGLMTLIDRWVVENAFRTLVERAQDPRAEPIGTCAIN--LSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLASAIRFINELKDTGRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQVINHIGHVMGKRTIAE.............................................................................................. 533
25 -13.6003ign_A mol:protein length:177 Diguanylate cyclase  ali model follow..  13  21.........................................................................................................................TWENLVDAEYERFRRYGQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQSD-SAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVAGDIQYTVSMGIAQTPENYMQWMQKADEALYKAKESGRNKVVVSLE.................................................................................................................................................................................................................................................................................................................................................................... 171
26 -13.4003qyy_A mol:protein length:167 Response regulator  ali model follow..  13  24.........................................................................................................................GCEQAMRDSVTAAQREGWPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLGAQD-WIGRWGGDEFLIGVHASEDEATLK----LNQWLSMLEDAEEAPLHVSAGSAVVGIDATELYRRADAAMYRAKFSGGRRLVR....................................................................................................................................................................................................................................................................................................................................................................... 165
27 -13.1004zmm_A mol:protein length:223 diguanylate cyclase  ali model follow..  14  76.........................................................................................................................GFHALHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPED-LLARFGGEEFVAMVRVRETTELTM----IANRIRELCAGTSVPVTISAGCTLSGEEPERALARADAALYDAKRAGRNRVV........................................................................................................................................................................................................................................................................................................................................................................ 221
28 -12.7004wxw_A mol:protein length:188 Uncharacterized protein  ali model follow..  18  38.................................................................................................................................RALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVLQTFAAVARSCLRDGD-VLARYGGEEFVLLLPHADAEQLES----CCERLREPVGVTVDTLSLSVGMTLADDDLDEALQRADQALYRAKRGGRNRCDA....................................................................................................................................................................................................................................................................................................................................................................... 175
29 -12.7004iob_A mol:protein length:161 Diguanylate cyclase TpbB  ali model follow..  12  8........................................................................................................................AFFEGRLSRALRDANEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESD-LVARLGGDEFAVLLAPADALRIADNIIASMQAPIRLSDGSTVSTSLTIGIALHADTPAALLHDADMAMYIAKRQARGSRRLAELN................................................................................................................................................................................................................................................................................................................................................................... 161
30 -12.6004urq_U mol:protein length:167 DIGUANYLATE CYCLASE  ali model follow..  21  12.........................................................................................................................YFFELGNRYLDLAKREGKKVFVLFVDLAGFKAINDTYGHLSGDEVLKTVSKRILDRVARSD-VVARYGGDEFTILLYDMKEEYLKSLLERILSTFRERVENKHLSVTPNIGVARDGENLEELLKVADMRMYKAKEMKVPY.......................................................................................................................................................................................................................................................................................................................................................................... 155
31 -12.6004urg_A mol:protein length:167 DIGUANYLATE CYCLASE  ali model follow..  21  12.........................................................................................................................YFFELGNRYLDLAKREGKKVFVLFVDLAGFKAINDTYGHLSGDEVLKTVSKRILDRVRRSD-VVARYGGDEFTILLYDMKEEYLKSLLERILSTFRERVENKHLSVTPNIGVARDGENLEELLKVADMRMYKAKEMKVPY.......................................................................................................................................................................................................................................................................................................................................................................... 155
32 -12.4003ezu_A mol:protein length:342 GGDEF domain protein  ali model follow..  17  140..................................................................YGRYLRRFIDGIGSCGLATAETELLGEALFRLWNEARQLAAQSHFDALTGVMTRAGFFKTVGSLAYAAQRSGSNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAETITSHLRRSD-VVGRYDGDEFVVYLSPVEPASLRT----VAENLRRSIEEESVPVTASIGVAQVDGGIEELVRLADECLMQAKYTGKNKVVVK...................................................................................................................................................................................................................................................................................................................................................................... 342
33 -12.3002zxo_A mol:protein length:666 Single-stranded DNA specific exonuclease RecJ  ali model follow..  11  19.............................................................................................................................................................................................................................................REVMAALEVGPEAALAYWHRG-----FRRKEDLDPP-------LALLPLKGLREAAALLEEALRQGKRIRVHGDY--DADGLTGTAILVRGLAALGADVHPFIPHR-------------------EGYGVLMERVPEHLEASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHYADLAAVGT---IADVAPLWGWNRALVKEGLARI-VGLLAEAVGYTGKAVEVAFRIAPRINAAS--EKALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVEGHPGVMGIVASRILEATLRPVFLVTVRSLAPISAVEALRSAEDGGHKEAAGFAMDEALFPAFKARVEAYAARFPD..... 423
34 -12.2003mtk_A mol:protein length:178 Diguanylate cyclase/phosphodiesterase  ali model follow..  13  23..............................................................................................................................RWLNLKVSQMDCIDTYLIFLEVRDLEKLNVTYGYDLVDELIIHISKRIKDIAGEGN-KAFKIGFDRFAIICKSENISDFIERMLSQLLLPYNVN-GNLIRVNFNIGAAQSNEAAANLMRRCDLALIKAKEEGLNEYVIFKPSIEIQ............................................................................................................................................................................................................................................................................................................................................................... 169
35 -12.0003i5c_A mol:protein length:206 Fusion of General control protein GCN4 and WSPR response regulator protein  ali model follow..  18  43.........................................................................................................................HFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPLTVSIGVSTGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQP................................................................................................................................................................................................................................................................................................................................................................... 199
36 -11.9004wxo_A mol:protein length:211 Uncharacterized protein  ali model follow..  18  61.................................................................................................................................RALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVLQTFAAVARSCLRDGD-VLARYGGEEFVLLLPHADAEQLES----CCERLREPVGVTVDTLSLSVGMTLADDDLDEALQRADQALYRAKRGGRNRCDA....................................................................................................................................................................................................................................................................................................................................................................... 198
37 -11.8004urs_A mol:protein length:188 DIGUANYLATE CYCLASE  ali model follow..  19  4..........................................................................................SSSGLVPRGSHMKELEYMAYHDPLTGLPNRRYFFELGNRYLDLAKREGKKVFVLFVDLAGFKAINDTYGHLSGDEVLKTVSKRILDRVRRSD-VVARYGGDEFTILLYDMKEEYLKSLLERILSTFRERVENKHLSVTPNIGVARDGENLEELLKVADMRMYKAKEMKVPY.......................................................................................................................................................................................................................................................................................................................................................................... 178
38 -11.4004h54_A mol:protein length:304 Diguanylate cyclase YdeH  ali model follow..  10  145..............................................................................................................................ESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYE-TVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAIEGHINITVTAGVSRPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVIN............................................................................................................................................................................................................................................................................................................................................................... 294
39 -11.4003icl_A mol:protein length:171 EAL/GGDEF domain protein  ali model follow..  14  11........................................................................................................................QLFCDRLLQALAAHERDGNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRDGDTVARIGGDKFTILLNGAKDTLNGALVAQKILDGLAQVFGAQQIVISVSIGIAVDGETMEQLLRNADTAMYHAKSRGKNN.......................................................................................................................................................................................................................................................................................................................................................................... 156
40 -11.4003hvw_A mol:protein length:176 Diguanylate-cyclase (DGC)  ali model follow..  11  20.................................................................................................................................LRLQRDGALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAELPD---TLYKISPTRFGLLLPRQQQEETESVCLRLLRAFESVCRGIPIKANVGLGVLPLADDTLDGDQDWLRLVVSAADDA------RDRGVGWARYNPPLDQAQQRLE................................................................................................................................................................................................................................................................................................................................................. 170
41 -11.3005f54_A mol:protein length:705 Single-stranded-DNA-specific exonuclease  ali model follow..  14  19.............................................................................................................................................................................................................................................LATMREWQVSPPVAQVLCGRDLRTELL-------------ALPLELTPNPALREAARHIVAAVREGKRIRIHGDY--DADGVSATATLVLGLRAIGANVHGFIPHR-------------------EGYGIHPDRVPEHAAAADLVVTVDCGVSNLDEVKSLLATGTEVVVTDHHAPGENFPECLVVHLLPLATLGT---VADVAPLLGENRALVRAGLAEMLRALMNEKRVRQPTARDVAFILAPRINAAG--DRALELLTTPSDHEAKSLAAYLEIRNQERRKIQDDMFAQALQLADPNDPALVDWHAGVMGIVASKLVETFNRPVYIVSVRSTPGISAVQGLRESRDGGHPGAAGFSLDPQNFGALRERIHGYVRQFPT..... 426
42 -10.6004yme_A mol:protein length:158 sensory box/GGDEF family protein  ali model follow..  13  14........................................................................................................................NSLQMRLAAAIDRVEASGESLAVICIDLDHFKEANDQHGHLAGDALLVETARRLQSAVQAPS-FAARLGGDEFIVVQQPAVAAELAGRLIEMLAAPVPFD-GQELAMGSSLGVSLDGRTAEALMANADMALYRAKESG............................................................................................................................................................................................................................................................................................................................................................................. 157
43 -9.7301w25_A mol:protein length:459 STALKED-CELL DIFFERENTIATION CONTROLLING PROTEIN  ali model follow..  11  225....................................................LPVLAMDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAID-LPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSHGREMLNVTISIGVSAEGDTPEALLKRADEGVYQAKASGRNAVVGKAA.................................................................................................................................................................................................................................................................................................................................................................... 453
44 -9.5404j40_A mol:protein length:437 FimX  ali model follow..  12  26.........................................................................................................................HFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGEEA-DLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLNGRSAQATLSIGVAGKTAKAQDVMNRAHRCADDAARKGGSQIKQYNPAE------------ELAAAAQRGDVIAILQQALETNSFRL---LFQPVISLRGDSHENYEVLLRLLNP---------------------------QGQEVPPAEFLHAAKEAGLAEKID---LNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAE.......................................................................................................... 386
45 -9.5203pjw_A mol:protein length:430 Cyclic dimeric GMP binding protein  ali model follow..  11  38.................................................................................................................................ARVSNPEQASSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECAKYQNLVTRIRGGEFAVLAPGMTREEALQLAQSLDSALSSLYAATDVAAVASIGLAPHGDSPQAVLSLGDQALAQAEGQGEQNWAC-------------DQSLVADVGDDHHAWHRLLDQALNQ-RRFELFFQPVVAAQDTQLVLHYKVLSRLLDEQGQTI----------------------------PAGRFLPWLERFGWTARLDRLMLERVLEQMAGHEESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQAVLEQLTRRL-LGFSLSLQRF-----GGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAE.............................................................................................. 399
46 -9.2003bre_A mol:protein length:358 Probable two-component response regulator  ali model follow..  16  94....................................................IPIIVLSTKEEPT-ANDYLVKLPDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDLTGLSN-RSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPLTVSIGVSTGGQTFRVLIEMADQALYQAKNNGRNQVGLMEQP................................................................................................................................................................................................................................................................................................................................................................... 340
47 -9.1503i5a_A mol:protein length:334 Response regulator/GGDEF domain protein  ali model follow..  18  182.........................................................................................................................HFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHIAPLTVSIGVATVGQHSRQLILDADKGLYLAKNNGRNQVAA....................................................................................................................................................................................................................................................................................................................................................................... 333

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.