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Query: gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNNLEKELLDNFKKNITQYAKQLEISIEKVYDEKGSVNAQKDIQNLLSEYANRQEIGEIRFIDKDQIIIATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVYNIPVKVDKKVIGNIYIESKINDVYNQLNNINQIFIVGTAISLLITVILGFFIARTITKPITDMRNQTVEMSRGNYTQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTIVQETGFVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIEDGDWDELast
1 -109.0004i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like protein  ali model follow..  38  1.........................................................................................................................................................................MTNVFESSPLFLRILLAVLIILLFFYFIFLNYREYKNNNQVKQLNAKVRSLITGHYTDKLKVEDNSDLSELVNNVNDLSEVFRLTHENLAQEKNRLTSILSYMTDGVLATDRSGKITVINDMAQKQLNVTREQALECNILDILDDDSYTYNDLITKTPEIVTRRDEYDEFITLRIRFALNRRESGFISGLIAVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALTESV-APSFIKVSLDETNRMMRMITDLLSLSRIDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVTITMQTTD--TQLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLPYENDNDAIDE. 442
2 -89.3004u7n_A mol:protein length:277 Histidine protein kinase sensor protein  ali model follow..  48  2............................................................................................................................................................................................................................................................................................................................................................GSSSSGLVPRGSAEFHDVTEQQKIDNDRKQFVSNVSHELRTPLTSLRSYIEALSDGAWKDPEVAPGFLKVTQEETDRMIRMINELLSLSRMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDIKREFTKRDLWVEIDTDKFTQVLDNIMNNAIKYSPDGGVVTCRLLETH--NQVIISISDQGLGIPRADLGHVFDRFFRVDKARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLPYEPYEEEDLWD 266
3 -83.8005uht_A mol:protein length:259 Sensor histidine kinase  ali model follow..  33  1...................................................................................................................................................................................................................................................................................................................................................................MVENVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGEDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAP-YVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDRAGEDNRQD 258
4 -82.6004jas_A mol:protein length:258 Histidine kinase  ali model follow..  33  2.....................................................................................................................................................................................................................................................................................................................................................................ENVTESKELERLKRIDRMKTEFIANISHELRTPLTVIKGYAEMIYNSLGEDLSTLKEFLETIIEQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAP-YVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDRAGEDNRQD 257
5 -68.6003jz3_A mol:protein length:222 Sensor protein qseC  ali model follow..  23  2.......................................................................................................................................................................................................................................................................................................................................................................................ERRFTSDAAHELRSPLTALKVQTEVAQLSD-DDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTL------NADNFIVRDNGPGVTPEALARIGERFYRPP---GQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWL........... 215
6 -67.7004q20_A mol:protein length:268 Sensor protein DivL  ali model follow..  27  25..............................................................................................................................................................................................................................................................................................................................................................................AALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERAD-GISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLECEEDVGLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRAL--GEVRLDVSDTGRGVPFHVQAHIFDRF------VGRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQPGAMQPE 259
7 -64.5004biu_A mol:protein length:298 SENSOR PROTEIN CPXA  ali model follow..  26  1.........................................................................................................................................................................................MGSSSSGLVPRGSHMENLYFQGKPARKLKNAADEVAQGNLRQHPELAGPQEFLAAGASFNQMVTALERMMTS----------------------------------------------------------------------------------------------------------------------QQRLLSDISHELRTPLTRLQLGTALLRRRSGESKE-----LERIETEAQRLDSMINDLLVMSRNQQKN-ALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAV----DKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYKRS...... 292
8 -59.1003sl2_A mol:protein length:177 Sensor histidine kinase yycG  ali model follow..  52  2.................................................................................................................................................................................................................................................................................................................................................................................................................................................................WIQIVRFMSLIIDRFEMTKEQHEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQEDDWDE 161
9 -58.6003a0r_A mol:protein length:349 Sensor protein  ali model follow..  22  3.................................................................................................................................................................................................................................................................VEHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFEKEPVFLNFYKFGERYFNIRFSPFRNAKTQLEGVIITIDDVTELYKYEEERKEMTARVAHEIRNPITIIGGFIMRMKKH-LDDPETLKKYINIITNELSRLETIVKEILEYSK---ERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMY--TKVRVSVWNSGPPIPEELKEKIFSPFF------TTKTQGTGLGLSICRKIIEEHGGKIWTENR-ENGVVFIFEIPKTPEKR..... 349
10 -51.3004kp4_A mol:protein length:236 Osmolarity sensor protein EnvZ, Histidine kinase  ali model follow..  26  3..............................................................................................................................................................................................................................................................................................................................................................................AGVKQLADDRTLLMAGVSHDLRTPLTRIRAYAETIYNSLGEDLSTLKELAESINKDIEECNAIIEQFIDYLRTGQEM---PMEMADLNAVLGEVIAAESGY--EREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY----GNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART--ISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTK 234
11 -49.9003d36_A mol:protein length:244 Sporulation kinase B  ali model follow..  23  5................................................................................................................................................................................................................................................................................................................................................................................VIRAEKMETHLAASISHEIRNPLTAARGFIQLIEEQPLAA-DKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDN--GRVLIRIADTGVGMTKEQLERLGEPYFT-----TKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASSPSSSTIS 234
12 -48.4006blk_C mol:protein length:158 Signal transduction histidine-protein kinase/phosphatase mprB  ali model follow..  29  3............................................................................................................................................................................................................................................................................................................................................................................................................................................................MVVHEPVDMTEVIDRSLERVRRRRSDIEFEVTV--TPWQVIGDSSGLGRAVLNVLDNAAKWSPPGGRVGVRLYQID-PGHAELVITDQGPGIPPQERHLVFERFFRSASARSM--PGSGLGLAIVKQVVLKHGGALRVDAAQPPGTAIHIVLPGRP........ 157
13 -48.4004gcz_A mol:protein length:385 Blue-light photoreceptor, Sensor protein fixL  ali model follow..  19  3...........................................................................................................................................................................................................................................................SFQSFGIPGQLEVIKKALDHVRVGVVITDEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTTVQIQNYKKDGTMFWNELNIDPMEIEDKTY--FVGIQNDITEHQQTQARLQEMASALAHELNQPLAAISNYMKGLAGSSDPNTPKVESALDRAAEQALRAGQIIRRLRDFVA----RGESEKRVESLSKLIEEAGALGLAGAREQNVQLSLDPGADLVLADRVQIQQVLVNLFRNALEAMAQSQRRELVVTNTAADDMIEVEVSDTGSGFQDDVIPNLFQTFF------TTKDTGMGVGLSISRSIIEAHGGRMWAESNASGGATFRFTLPAADENLE.... 377
14 -47.2004cti_A mol:protein length:273 OSMOLARITY SENSOR PROTEIN ENVZ, AF1503  ali model follow..  28  2...........................................................................................................................................................................................................STITRPIIELSNTFDKIAEGNLEAEVHQNRADEIGILAKSIERLRRSLKQLADD----------------------------------------------------------------------------------------------------------------------RTLLMAGVSHDLRTPLTRIRLATEMM-------SEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM---PMEMADLNAVLGEVIA--AESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY----GNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART--ISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTK 271
15 -47.0003cgy_A mol:protein length:157 Virulence sensor histidine kinase phoQ  ali model follow..  22  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................SVLLSRELHPVAPLLDNLISALNKVYQRKGVNISMDSPEISFVGEQNDFVEVMGNVLDNACKYCLE----FVEISARQTDDHLHIFVEDDGPGIPHSKRSLVFDRGQRADTLRP----GQGVGLAVAREITEQYAGQIIASDSLLGGARMEVVFGRQHPTQKEE.. 157
16 -46.0001ys3_A mol:protein length:150 Sensor-type histidine kinase prrB  ali model follow..  21  1...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TSDDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPT-CIIVGLPAGLRLAVDNAIANAVKHGGAT---LVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASH---SGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGPS........ 150
17 -45.7001id0_A mol:protein length:152 PHOQ HISTIDINE KINASE  ali model follow..  24  2................................................................................................................................................................................................................................................................................................................................................................................................................................................................ELHPVAPLLDNLTSALNKVYQRKGVNISLDSPEISFVGEQNDFVEVMGNVLDNACKYCLE----FVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRP----GQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE.. 152
18 -42.0004pl9_A mol:protein length:183 Ethylene receptor 1  ali model follow..  25  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................DGSLQLELGTFNLHTLFREVLNLIKPIAVVKKLPITLPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQ-GSISVTALVTKSDTRLRVKVKDSGAGINPQDIPKIFTKFAQTQSLATRSSGGSGLGLAISKRFVNLMEGNIWIESDLGKGCTAIFDVKLGISERSNE.. 183
19 -39.3005idj_A mol:protein length:242 Cell cycle histidine kinase CckA  ali model follow..  23  1.............................................................................................................................................................................................................................................................................................................................................................................LSQAQKMQAIGQ-LAGGVAHDFNNLLTAIQLRLDQLLHRHPVGDPSYEG-LNEIRQTGVRAADLVRKLLAFSR----KQTVQREVLDLGELISEFEVLLRRLLEDVKLITDYGRDLPQVRADKSQLETAVMNLAVNAVRAAKGGGVVRIRTARLTDGDTAFIEVSDDGPGIPPDVMGKIFDPFFT-----TKPVGGTGLGLATVYGIVKQSDGWIHVHSRPNEGAAFRIFLPVYEA....... 242
20 -38.8004r3a_A mol:protein length:352 Blue-light-activated histidine kinase 2  ali model follow..  12  2...........................................................................................................................................................................................................................................................EFKGLMAVGLAEHDKEAWGRLPFSLTIADDDEPLIYVNRAFEQMTGYSRSSVVGRNCRFLQGEKTDPGAVERLAKEETIYNYRADGEGFWNHLLMGPLEDQDEKCRYFVGIQVDMGQSESPDRALDRQLAEVQHRVKNHLAMIVSMIRIQSSQAGGVGSQFDSLSRRV-----EALQLLYQEMDIAG----AAKATDKIIPLGAYLGRIASAINHIDGRGAIKVNVQADTVDVPVEAGRIGLLVSEVLTNALQHARASGVVQLRSSVMS-GEQLRVTVEDDGRGIPED----------------CDWPNEGNLGSRIVRQLVQGLGAELNVTRG-GTGTIVNIDIPLSQQKTLIADE 348
21 -35.6001r62_A mol:protein length:160 Nitrogen regulation protein NR(II)  ali model follow..  24  4..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TRVTESIHKVAERVVTLVSMELPDNRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQLGPEGGEIILRTRTERYRLAARIDVEDNGPGIPPHLQDTLFYPMV------SGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLPIRK........ 160
22 -35.0005ukv_A mol:protein length:74 ATP-binding protein  ali model follow..  39  2...........................................................................................................................................................................................................................................................................................................................................................................HMAEKARDSEDRMRQFITDASHELRTPLTTIRGFAELYRQGAARDVG---MLLSRIESEASRMGLLVDDLLLLAKL......................................................................................................................................................................... 74
23 -34.0002e0a_A mol:protein length:394 Pyruvate dehydrogenase kinase isozyme 4  ali model follow..  14  1..............................................................................................................................................................................................................................GPVPREVEHFSRYSPSPL--SMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSL-----------MDLVEFHEKSPDDQK--------------------------------------ALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNL-QYFLDRFYMNRISTRMLMNQHILIQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIE... 356
24 -33.8005idm_A mol:protein length:179 Cell cycle histidine kinase CckA  ali model follow..  25  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................VQREVLDLGELISEFEVLLRRLLEDVKLITDYGRDLPQVRADKSQLETAVMNLAVNAVRAAKGGGVVRIRTARLTDGDTAFIEVSDDGPGIPPDVMGKIFDPFFT-----TKPVGGTGLGLATVYGIVKQSDGWIHVHSRPNEGAAFRIFLPVYEAPAALE.. 173
25 -33.1001jm6_A mol:protein length:407 Pyruvate dehydrogenase kinase, isozyme 2  ali model follow..  14  104...........................................................................................................................................................................................................................................................................................................................................................................EDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNI-QYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHPNCSVSDVVKDAYDMAKLLCDKQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVE... 369
26 -32.4004v25_A mol:protein length:408 [PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)] KINASE ISOZYME 2, MITOCHONDRIAL  ali model follow..  16  105...........................................................................................................................................................................................................................................................................................................................................................................EDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPV-SNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHIGSDAYDMAKLLCDKYYMASPDLEIQEINSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVE... 370
27 -32.2001y8n_A mol:protein length:419 [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3  ali model follow..  18  107...........................................................................................................................................................................................................................................................................................................................................................................EDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNI-QYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKHPTCNVADVVKDAYETAKMLCEQEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFE... 374
28 -31.7004fpp_A mol:protein length:247 phosphotransferase  ali model follow..  12  3........................................................................................................................................................................................................................................................................................................................................................SSSSGLVPRGSHNQMTETVTETTAPASPEADVQGLAARLCHDFISPASAIVSGLDLLEDP--SAQDMRDDAMNLIASSARK----LADLLQFTRVAFGASASAEN-------SRELEKLAQGVFAHVRPTLDWQIEP---QAMNKPSSRAVLNIAQIAASALPAGGVATVKGVAAD--GRFSIIADAKGPRARLR--PEVLAGLK--GEPLAEGLGGPWVQAAYLNALVRAAGGQIAVEIG-EDRASIAAWVPA.......... 241
29 -31.4003tz0_A mol:protein length:418 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial  ali model follow..  17  133..........................................................................................................................................................................................................................................................................................................................................................................FQKLTDFPPIKDQADQLVRQLLDDHKDVVTLLEGLRESRKH--IEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKRVRIN-GHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREES... 409
30 -31.3002q8f_A mol:protein length:407 [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1  ali model follow..  11  2.....................................................................................................................................................................................................................DSGSSPASERGVPGQVDFYARFSPSPL--SMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSW------------------YIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKE-------SFGVDPVTSQNVQYFLDRFYMSRISIR--LLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIK----------DGYENARRLCDLYYINSPELELEELNPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHANRIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIE... 369
31 -30.2004mn5_A mol:protein length:128 Sensor protein kinase WalK  ali model follow..  99  2.........................................................................................................................................................................................................................................................SVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTIVQETGFVTGYIAVLHDVTEQQQVERER........................................................................................................................................................................................................................................ 128
32 -29.7002f95_B mol:protein length:163 Sensory rhodopsin II transducer  ali model follow..  10  21...............................................................................................................................................AVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLGGDTAASLSTLAAKASRMGDGDLDVELETRREDEIGDLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEE.............................................................................................................................................................................................................................................................................................................................................. 151
33 -29.6004ywz_A mol:protein length:152 Sensor protein kinase WalK  ali model follow..  98  2...............................NATNNLEKELLDNFKKNITQYAKQLEISIEKVYDEKGSVNAQKDIQNLLSEYANMQEIGEIRFIDKDQIIIATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVYNIPVKVDKKVIGNIYIESKINDVYNQLNNINQ.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 152
34 -29.3005is1_A mol:protein length:152 Histidine kinase  ali model follow..  99  2...............................SFTNNLEKELLDNFKKNITQYAKQLEISIEKVYDEKGSVNAQKDIQNLLSEYANRQEIGEIRFIDKDQIIIATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVYNIPVKVDKKVIGNIYIESKINDVYNQLNNINQ.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 152
35 -29.1004qpj_A mol:protein length:243 Phosphotransferase  ali model follow..  8  10...............................................................................................................................................................................................................................................................................................................................................................PRGSHMASMTGGQQMGRGSMSLPVTLSLCSRICHDIISPIGAINNGLELLEEGGADEDA-----MALIKSSARNASAR----LQFARIAFGAA----GSAGVQIDTGDAQNVATEYFRNEKPEFTWEGARVLL---PKNKVKLLLNMLLIGNGAIPRGGSLAVRLEGSDTDPRFVITVKGRMLRVPPKFLELHSGAAP------EEPIDAHSVQPYYTLLLAEEAGMKISIHATAEDIV.................. 233
36 -27.8005jjj_B mol:protein length:141 Sensory rhodopsin II transducer  ali model follow..  12  21...............................................................................................................................................AVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLGGDTAASLSTLAAKASRMGDGDLDVELETRREDEIGDLYAAFDEMRQSVRTSLED............................................................................................................................................................................................................................................................................................................................................................... 134
37 -27.3004gyc_B mol:protein length:135 Sensory rhodopsin II transducer  ali model follow..  12  24...............................................................................................................................................AVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLGGDTAASLSTLAAKASRMGDGDLDVELETRREDEIGDLYAAFDEMRQSVRTSL................................................................................................................................................................................................................................................................................................................................................................. 135
38 -25.1004mn6_A mol:protein length:107 Sensor protein kinase WalK  ali model follow..  100  3.........................................................................................................................................................................................................................................................................DSVITHMSDGIIATDRRGRIRIVNDMALKMLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTIVQETGFVTGYIAVLHDVTEQQ.............................................................................................................................................................................................................................................. 107
39 -23.4001til_A mol:protein length:146 Anti-sigma F factor  ali model follow..  15  36......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ELTEIKTVVSEAVTNAIIHGDPNGIVSISVIIED--GVVHLTVRDEGVGIP--DIEEARQPLF----TTKPELERSGMGFTIMENFM----DEVIVESEVNKGTTVYLKKHIVKSKA..... 143
40 -23.3001l0o_A mol:protein length:150 Anti-sigma F factor  ali model follow..  15  36......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ELTEIKTVVSEAVTNAIIHGDPNGIVSISVIIED--GVVHLTVRDEGVGIP--DIEEARQPLF----TTKPELERSGMGFTIMENFM----DEVIVESEVNKGTTVYLKKHIVKSKRYLEGS 148
41 -23.1002jhe_A mol:protein length:190 TRANSCRIPTION REGULATOR TYRR  ali model follow..  6  44..................................................................................................................................................................................................................................AELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITYLQDENDQHVLTGAVVMLRSTIRMGR............................................................................................................................................................................................................................................. 190
42 -22.8004r39_A mol:protein length:232 Blue-light-activated histidine kinase 2  ali model follow..  18  2.........................................................................................................................................................................................................................................................................................................................................................................EFKGLMGQSESPDRATEQLAEVQHRVKNHLAMIVSMIRI-------QSSQAGGVGSQFDSLSRRVEALQ--LLYQEMDIAGAAKATDKIIPLGAYLGRIASAINHIDGRGAIKVNVQADTVDVPVETAGRIGLLVSVLTNALQHARASGVVQLRSSVMS-GEQLRVTVEDDGRGIPED-----------CDWPNEG-----NLGSRIVRQLVQGLGAELNVTRG-GTGTIVNIDIPLSQQKTLIADE 228
43 -22.6001th8_A mol:protein length:145 Anti-sigma F factor  ali model follow..  16  36......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ELTEIKTVVSEAVTNAIIHGDPNGIVSISVIIED--GVVHLTVRDEGVGIP--DIEEARQPLF----TTKPELERSGMGFTIMENFM----DEVIVESEVNKGTTVYLKKH........... 137
44 -22.5004mt8_A mol:protein length:102 Ethylene response sensor 1  ali model follow..  25  31...............................................................................................................................................................................................................................................................................................................................................................................EAEMAVHARNDFLAVMNHEMRTPMHAIISLSSLLLETELSPEQ--RVMIETILKSSNLVATLISDVLDLSRLED....................................................................................................................................................................... 102
45 -22.4003cwf_A mol:protein length:122 Alkaline phosphatase synthesis sensor protein phoR  ali model follow..  14  1..................................SNAETSDQRKAEEHIEKEAKYLASLLDA-------GNLNNQANEKIIKDAGGALDVSASVIDTDGKVLYGSNGRSA-------DSQKVQALVSGH--------EGILSTTDNKLYYGLSLRSEGEKTGYVLLSASEKSD................................................................................................................................................................................................................................................................................................................................................................................................................................................... 117
46 -21.8002zbk_B mol:protein length:530 Type 2 DNA topoisomerase 6 subunit B  ali model follow..  17  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................MSAKEKFTSLSFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGNIKITIDLDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTGMYGLGVKAAVLYSQMHQDKIEIETSPNSKRIYTFKLKIDINKNE.... 152
47 -21.0003mxq_A mol:protein length:152 Sensor protein  ali model follow..  13  2........................................................................................................................................................................................................................................................ENLYFQSNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPEDYLKRKIDTALVIESSSFSSWEQKPMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQQ.......................................................................................................................................................................................................................................... 146
48 -20.7002q2e_B mol:protein length:621 Type 2 DNA topoisomerase 6 subunit B  ali model follow..  15  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................METPIAEELAKKQKSISVAEFFEKNRQILDSAPRSLITTVKEAVDNALDACEEAGILPDIL-ERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQGQQGIGISAAVLYAQMTAGRTKILSKTAPAHYYELMINTSTNEPDILVD 163
49 -20.7002ayx_A mol:protein length:254 Sensor kinase protein rcsC  ali model follow..  12  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MGGSGVEGL-SGKRCWLAVRNASLCQFLETSLQRSGIVVTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIEKAPGEWVHSVAAPHELPALLARIYLIEMESDD... 112
50 -20.6002lfr_A mol:protein length:114 Uncharacterized protein, Osmolarity sensor protein envZ chimera  ali model follow..  26  2.........................................................................................................................................................................................................TTSTITRPIIELSNTADKIAEGNLEAEVPHQNRDEIGILAKSIERLRRSLKQLADD----------------------------------------------------------------------------------------------------------------------RTLLMAGVSHDLRTPLTRIRLATEMM-------SEQDGYLAESINKDIEECNAIIEQFIDYLR.......................................................................................................................................................................... 114
51 -20.3003zrv_A mol:protein length:116 HAMP, OSMOLARITY SENSOR PROTEIN ENVZ  ali model follow..  26  3.........................................................................................................................................................................................................HMSTITRPIIELSNTFDKIAEGNLEAEVPHQNRDEIGILAKSIERLRRSLKQLADD----------------------------------------------------------------------------------------------------------------------RTLLMAGVSHDLRTPLTRIRLATEMM-------SEQDGYLAESINKDIEECNAIIEQFIDYLR.......................................................................................................................................................................... 115
52 -20.3003zrw_B mol:protein length:116 AF1503 PROTEIN, OSMOLARITY SENSOR PROTEIN ENVZ  ali model follow..  26  3.........................................................................................................................................................................................................HMSTITRPIIELSNTVDKIAEGNLEAEVPHQNRDEIGILAKSIERLRRSLKQQADD----------------------------------------------------------------------------------------------------------------------RTLLMAGVSHDLRTPLTRIRLATEMM-------SEQDGYLAESINKDIEECNAIIEQFIDYLR.......................................................................................................................................................................... 115
53 -19.5002ykf_A mol:protein length:305 PROBABLE SENSOR HISTIDINE KINASE PDTAS  ali model follow..  9  3.........................................MSTLGDLLAEHTVLPGSAVDHLHAVVGEWQLLADLSF---------ADYLMWVRRDDGVLVCVAQCRPNTGPTAANSMPLVAATFSGGV-REGAVGQQNSCQHDGHSVEVSPVRFGDQVVAVLTRHQPELAARRR---------------------------------------------------------SGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGDGFIRLDVDGVVSYASPNALSAYHR-TTELEGVNLIDATRPLI-EHVQDLLAGDGKGMRMEVDAGGATVLLRTLPLV-VAGRNVGAAILIRDVTEVKRRDRSKDATIREIHH............................................................................................................................................................................................................................... 305
54 -19.0003zcc_A mol:protein length:114 HAMP, OSMOLARITY SENSOR PROTEIN ENVZ  ali model follow..  26  3.........................................................................................................................................................................................................HMSTITRPIIELSNTADKIAEGNLEAEVPHQNRDEIGILAKSIERLRRSLKQLADD----------------------------------------------------------------------------------------------------------------------GTLLMAGVSHDLRTPLTRIRLATEMM-------SEQDGYLAESINKDIEECNAIIEQFIDY............................................................................................................................................................................ 113
55 -19.0004cq4_A mol:protein length:309 ENGINEERED VERSION OF TRANSMEMBRANE RECEPTOR AF1503  ali model follow..  19  195.....................................................................................................................................................YFQYLTQNPANPAENIASEISKSVEGAIQQVKNLLTLAADRAEQIVNDLASTTTSTITRPIIELSNTADKIAEGNLEAEVPQNRADEIGILAKSIERLRRSLKVAMESLEEALK......................................................................................................................................................................................................................................................................................................................................................... 309
56 -18.9004xiv_A mol:protein length:252 Chemotaxis protein CheA  ali model follow..  17  9..................................................................................................................................................................................................................................................................................................................................................................................RVDIEKLDNLMDLMGELVIARSRILETLKKYNIKE-------------LDESLSHLSRITLDL--------QNVVMKIRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEILLHLLRNAIDHKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRLFVPGFSTKEKVS-EVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLT......... 252
57 -18.4002qkp_A mol:protein length:151 Uncharacterized protein  ali model follow..  13  8...........................................................................................................................................................................................................................................................QQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAVFKRTPSQVGRNVELCHVLDKVKKVFELLRNGQRDKVNMSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDEG................................................................................................................................................................................................................................... 145
58 -18.4005epv_A mol:protein length:233 Blue-light-activated histidine kinase  ali model follow..  12  1.......................................................................................................................................................................................................................................................................................................................................................................MASVQDVTERKKAEANKALVSREIAHRFKNSMAMVQSIANQTLRNTYDPEQANRLF-------SERLRALAHDMLLKENWAG---------ATIQQICATALAPFNSTFANR---IHMSGPHLLVSDRVTVLSLAFYELATNAVKYSNEKGVINITWAIMEDKGEKKFHMRWAESRGPEVMQPA------------------RGFGQRLLHSVLAEEKAKCDVEFAA-SGLLIDVLAPITPEVFPG... 216
59 -18.1005fq1_A mol:protein length:112 HISTIDINE KINASE  ali model follow..  19  4...............................................................................................................................................................................................................................................................EEIGLLYQEKQAILEAIREGIVAINQEGTITMVNQTALKLLGYDERNVLGTPILQLIPHSRLPEVIR---TGQAEYDDEMVLGGETVIANRIPIKNKQGRVIGAVSTFRN................................................................................................................................................................................................................................................... 111
60 -17.8005iji_A mol:protein length:236 Nitrate/nitrite sensor histidine kinase NarQ  ali model follow..  10  1...MIVKRPVSASLARAFFYIVLLSILSTGIALL----------TLASSLRDAEAINIAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHLNANWLEMNNRLSKGDLPWYQANINNYVNQIDLF-----------------VLALQHYAERKMLLVVAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPLDTNLPNELGLLAKTFNQMSSELHKLYRSLE............................................................................................................................................................................................................................................................................................................................................................. 230
61 -17.5004gt8_A mol:protein length:139 Sensor protein vraS  ali model follow..  17  4...............................................................................................................................................................................................................................................................................................................................................................................................................................................................LKDKSLGEGIKDLVIDLQ---KKVPMKVVHEIQDFKVPKGEDHLFRITQEAISNTLRHSNGT---KVTVELFNKDDYLLLRIQDNGKGFNVDEKLE------------------QSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYD... 138
62 -17.4003fc7_A mol:protein length:125 HTR-like protein  ali model follow..  17  2....................................................................................................................................................................................................................................................NALANRIENV-VSQERTRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEARLEAGKSAVENGTATRSEDAVGGRHYHNQYIPV-DSHRKSDTFQLVSRDIT................................................................................................................................................................................................................................................. 125
63 -17.4004hi4_A mol:protein length:121 Aerotaxis transducer Aer2  ali model follow..  17  1..................................................................................................................................................................................................................................................................GSHMARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQL------HKNPAHQRHLLANLTGVHKAELNLGGRRFSLDVVPVFNDANARLGSAVQWTDRTE................................................................................................................................................................................................................................................ 120
64 -17.3002w0n_A mol:protein length:118 SENSOR PROTEIN DCUS  ali model follow..  15  2.........................................................................................................................................................................................................................................................HMGLEPYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVDVSEVLRDGTPRRDEEITIKDRLLLINTVPVR-SNGVIIGAISTFRDKT................................................................................................................................................................................................................................................. 118
65 -17.1004bxi_A mol:protein length:153 ACCESSORY GENE REGULATOR PROTEIN C  ali model follow..  14  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................NAIKLNGIE------NLKVREIKGLI--TAKILRAQEMNIPISIEIPDEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPIIRVAFIESENSVTFIVMNKCADDI-PRIHELFQESF------STKGEGRGLGLSTLKEIADNADNVLLDTIIENGFFIQKVEIINN......... 153
66 -17.0003lyx_A mol:protein length:124 Sensory box/GGDEF domain protein  ali model follow..  15  3..................................................................................................................................................................................................................................................................VDILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK............................................................................................................................................................................................................................................. 123
67 -16.0005iu1_A mol:protein length:116 CTR1-like protein  ali model follow..  13  2.............................................................................................................................................................................................................................................................................EFESQPCVSIDLRGNITSWNRAAEQLYQFKEGEVMGRNLVDLIVPPNAKTAALDTIMRGQFSCVRRDNAILNTVVTQKPILDDDQKISGISVCTEPYSMPELMAR.......................................................................................................................................................................................................................................... 114
68 -15.9003zxq_A mol:protein length:124 HYPOXIA SENSOR HISTIDINE KINASE RESPONSE REGULATOR DOST  ali model follow..  18  2...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GLRHRLDKVIDQLAIPALHTTVQYTGPLSVVDTVLANH-AEAVLREAVSNAVRHA-NATSLAINVSVE---DDVRVEVVDDGVGISGD---------------------ITESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR......... 123
69 -15.9001v9y_A mol:protein length:167 Heme pas sensor protein  ali model follow..  12  20........................................................................................................................................................................................................................................................EVIMKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLI.................................................................................................................................................................................................................................... 161
70 -15.9003luq_A mol:protein length:114 Sensor protein  ali model follow..  16  1....................................................................................................................................................................................................................................................................SDERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFKSVHRRGLAGEVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT................................................................................................................................................................................................................................................. 114
71 -15.8003a0s_A mol:protein length:96 Sensor protein  ali model follow..  20  1...............................................................................................................................................................................................................................................................................METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVLNFYKFGERYFNIRFSPFRNAKTQLLEGVIITID................................................................................................................................................................................................................................................... 95
72 -15.7003fg8_A mol:protein length:118 uncharacterized protein RHA05790  ali model follow..  16  1.................................................................................................................................................................................................................................................................MGSSSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPESYFDALCRKVLATGRERVDSLYSPGMTIEVTAAADSG------ALVVHFRDVTAE............................................................................................................................................................................................................................................... 112
73 -15.4003a0v_A mol:protein length:96 Sensor protein  ali model follow..  20  1...............................................................................................................................................................................................................................................................................METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVLNMYKMGERYFNIRFSPFRNAKTQLLEGVIITID................................................................................................................................................................................................................................................... 95
74 -15.3003mjq_A mol:protein length:126 uncharacterized protein  ali model follow..  19  1........................................................................................................................................................................................................................................................................MKNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAEKESLPLSLEKKEGTSIPAKARIWQGKWHNEPCLFAIIKDLSKEERASSPFLE...................................................................................................................................................................................................................................... 120
75 -15.2005hwt_A mol:protein length:130 Sensor histidine kinase TodS  ali model follow..  16  2............................................................................................................................................................................................................................................................................AMALYEFVGLLDAHGNVLEVNQVALEGGGITLEEIRGKPFWKARTEATQKRLVETASSGEFVRCDVEILGKSAVDFSLLPICNEEGSIVYLLAEGRNITDKKKAEAMLALKNQELE................................................................................................................................................................................................................................ 130
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.