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Query: gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSLKTVIGMNNKEHIKSVILALLVLMSVVLTYMVWNFSPDIANVDNTDSKKSETKPLTTPMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHVRRDHNLMIPDLSSDFTLFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDNIVLYAISKDRHDYVKLTTTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAPSKPEKLKTYRMVFNTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKYHYKNLSEDEASSSKMEETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGYPTFNKEGSNQIQVTWGEKGVFDYRRSLLRTDVVLNSEDNKTLPKLESVRSSLANNSDINFEKVTNIAIGYEMQDNSDHNHIEVQINSELVPRWYVEYDGEWYVYNDGRLELast
1 -78.1002fgt_A mol:protein length:417 Two-component system yycF/yycG regulatory protein yycH  ali model follow..  15  2.................................................ESTVRVKHKIEKTTQKLSETVRPRDMFIHDDGAHYKVDDN-ALYEEIWSDLPHWDVKGIKDISFKSWFYGIGGSEAKLDLQFSDTIPIDIFQTLFKWSNQSF-EYSSFDHILIPFNTKANKKIYLVSYSKQLILEVTVESANYRNIMNDLKNRQSNMPAF----SLFSIGSKKEFLLPNKPLTMDKKEFVTESIKTNTFKQALFSDPSIVRENYNNRNVLTDGISRLDVNLSQRQVQFQQRNLVQSTSYQTGELIKKSQKYLEDTGSWTDHYQFFNI--NDSQQLSFYIFMDQIPVINSTATSAITVQWANDDILSYKRPNYSLGTNPIKTSETELMGGSEVKMLLSKQTAYDTDKIDQIFLAYQLVSTSTNDD----PLVELEPVWAMKVNGKIVPITKDLVE 417
2 -26.9002o3o_A mol:protein length:254 YycI protein  ali model follow..  11  31.................................................................................................................................................................................................................................LNKEATEGYRITANQKSFSKEEIEA------------------LKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDGEK-YKLWKVDKSKKEIIFFQTYEGHYIYQKTMIGQVVLHLNGKNVVSYDQTT--LETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQV-------LAPVWRITVEYEKKVNGEKK.. 234
3 -15.3005coz_A mol:protein length:358 Uncharacterized protein  ali model follow..  12  156..................................................................................................................................................................................................................................................................................................TDKQLMFMSAEEAEELAVKTAKELEINVCEKNELYDKQNDTYVFFMFPDVYGIPYSRCPQENHLVIAMDEKGISFLD--IPPLYDWVETTETGEILHPSSILSKEVDKLKKYVTEVSEISLEYMLFADKNET-------YDIKPVWVVYYYQNQLVTGENSYT 338
4 -11.8005boi_A mol:protein length:246 Germination protein YpeB  ali model follow..  10...............................................................................................................................................................................................................................................VSEDVAKQVARSFLNLKGNEQGKDADYEVYSKTNQETYMDKGGYPLWVLEDRDIKKQNISLNDAMNKATKFLKDHRFESLVMAESAQYDNMGVFTFVEQTESGVRIYPDS---KMKMSLEDGSVIGFSAKDFLLKHRTRDIPKPKI-SKEQAKTKLNSNVKVMEERLNEEVLCYEFLGTIKNDT.............................. 212
5 -6.7404u6b_A mol:protein length:433 Conserved hypothetical lipoprotein  ali model follow..  1...MQINLFL------KQSTFSLLMALSLIAC--------SEQKTETKSTPTEDSATTEHKVFPHKMPSEKPDMPLSAAAERMFSYPAPRVQDNELFSQFKYTRLKGFDYNNGDGTISRR---------------PSRPI------------------------LVNGKYYIYYTKRDTKVPPIGWNRAKEATDEIPSTDWDLCEI-----------------YATSEDGTTWKEEGVAIARPEKPKPGWRSVATPDILVWKGKYYLYYQAFNEPSGLRGDWCPVSVSYADSPDGPWTHGGDSVIPFGKKGEWDQDATHDPQPI--VYKGKIHLYYKAAYNKWPDIRDKYAVGHGLAIADDPLGPFEKH.................................................................................... 296
6 -6.6502l6w_A mol:protein length:39 Beta-type platelet-derived growth factor receptor  ali model follow..  24  15..................LALVVLTIISLIILIMLWQKKPRYE.......................................................................................................................................................................................................................................................................................................................................................................................................................... 39
7 -5.5705xwe_A mol:protein length:83 Weak toxin DE-1 homolog 1  ali model follow..  41  1...............MKPVLLTLVVVTIVCLD..................................................................................................................................................................................................................................................................................................................................................................................................................................... 17
8 -5.3905mg3_E mol:protein length:140 Protein translocase subunit SecE  ali model follow..  16  6.KAMGANTEAQGSEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALA-LTTKGKATVAFAREARTEVRKVIWPTR........................................................................................................................................................................................................................................................................................................................................................................................... 94
9 -5.2803r2t_A mol:protein length:249 Putative uncharacterized protein  ali model follow..  15  1MGSSENLFQGMKFTVIAKAIFILGILTTSVMI----------TENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTN...................................................................................................................................................................................................................................................................................................................................................................................... 70
10 -5.2103nqy_A mol:protein length:180 Secreted metalloprotease Mcp02  ali model follow..  10  2........................................................................................................................................................................................................................................................................................NKKYLNQQPTINNMVQSNSASLLSVSPNQLIGLSVGNELVVLKEFTSNNGEVTRRYQQTYQGIPVIGDT----VSLTFNNGMLKKAHGAAVY-NIDEDLSDVSAKLTKKDAILKGSKTGIAAKSVGLKK------HNEQSRLAIWVDDQNKAHLVYEVSY............. 150

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.