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Query: gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEIIQAILFDVVGYEVKPHFITTEELANYSNNETATPKETTKPSTETTEDNHVLGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEIRNVLast
1 -100.000PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein  ali follow..  64  1...................................................................................................................LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLN....................................................................................................................... 219
2 -34.400PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix  ali follow..  69  1........................................................................................................................................................................................................................................................................................................................................................................IKLIQQIVANHYNLEIEDMKSRKRTRAIAFPRQVAMYLSRELTDSSLPKIGEKFGGRDHTTVLHAYNKI........................ 69
3 -18.800PF01695.17; Y4IQ_SINFN/60-238; IstB-like ATP binding protein  ali follow..  19  9...............................................................................................................AEAHLPPGKTLESFAFDAVPMVSKAQVMAIAAGDSAKGANILLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSIMITANQPFGETLAAVDRLVHH........................................................................................................................................................................................ 175
4 -17.500PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain  ali follow..  20  1...NTTWEKVCDSLQKRLSPGTFKVWIAPLVA-SEHDGQLFLYAPSLFVMNWIQERLFVDITEAVSE.................................................................................................................................................................................................................................................................................................................................................................................................. 63
5 -11.100PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)  ali follow..  13  35.............................................................................................................................LKNIERQKDAIVANTRQFVSKLPANNVLLTGARGTGKSSLIKACLNAF--VRDGLRLVEVDKDDLLGDIVELVAQRPER----------VIFCDDLSF-----EEGESGYKSLKSALDGSVAIYATSNRRHLLPEYMKDNLSERF--GLWLSFYPPKQDEYLAIVGHWLRHFGCTDEDDALVWALERGSRSGRVAWQFARDWGG............................................................................................................................ 257
6 -11.000PF05621.11; B7J739_ACIF2/21-211; Bacterial TniB protein  ali follow..  18  17..................................................................................................................................NRLLDNLRSLMEKPVRPRMPNLLIVGDSNNGKTTVIRRFGEGVNEDAEPVPVIVSDEKGLYIAILERFWTPYRATDSARDCHVRILVIDEFHLLTGTVTKQREVMNAIKLLCNELAPIVGVGIREAVRVLHTDPQHASRFD...................................................................................................................................................................................... 180
7 -10.700PF00910.22; A7M6L1_9SECO/473-576; RNA helicase  ali follow..  15  1.......................................................................................................................................................VYAYGESRTGKTLVVDKLITDF-------------QNHFGLGKDTVYSRNPIDQYWSGYRRQPIVSIDDFGAVTCDPSMEAQMIPLVSSMMFDSKFIFCSSN........................................................................................................................................................................................................ 103
8 -10.000PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase  ali follow..  13  71.......................................................................................................................................................LYMWGGVGRGKTWLMDLFYQSL----PGERKQRLHFHRFMLRVHEELTALQGQT-DRFKAETDVLCFDEFFVSDITDAM---LGGLMKALFARGITLVATSNIPPDEL----------YRNGLQRARFLP-----IDAIKQHCDVMNVDAGVDY-LWLSPLHDETRAQMDKLWLALAGGKRENSPTLEIGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIAL-------------VDEFYERH--VKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEM 359
9 -9.030PF05496.12; RUVB_BACAN/21-179; Holliday junction DNA helicase RuvB P-loop domain  ali follow..  19  5........................................................................................................................TLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDLAAVLTSLQPG------------DVLFIDEIHRL---HRSIEEVL--YPAMEDFCLDIVIGKGPSARSVRALSAPLRDRFG...................................................................................................................................................................................... 154
10 -8.970PF07728.14; Q82S33_NITEU/475-632; AAA domain (dynein-related subfamily)  ali follow..  20  2.......................................................................................................................................................LILQGPPGTGKTWLAKRLAFALMGQKDDSKVRAVQFHPNLSDFVRGWRPTGEGKLSKDPSSKFVVVIEEIN-----RGNPAQIFGELLTLLEAGKRVVGTMNIADRSLALVDLALRRRF....................................................................................................................................................................................... 158
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.