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Query: gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIKLast
1 -24.000PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain  ali follow..  12  1MKISKLKLKNFRSYRSVEISFE-NLTAFIGRNDIGKSTILEALDIFFNEGKGVVKLEANDLNTEAK--------GQDEQYIEITVCFNDLPTEITIDSTYLTTLDEFLLNEDKELEVIKRYPLKGLKEQVYLSAYHPSGQNCSDLYTKKSSDLKKIIKDADILCENNSVNAIMRSAIWKHYDASQHRKLRELDLAKEDGKNIWEKIKEFLPQYSLFQSDRKNSDNDSEVEIISSSNLETQFNQIATEVTKKLREVANSTLSKLKEMNPDIAEGLEGIAMNKRGS-GVRRLILLNFFRAKAEEKASRDNRTLIYAIEEPETSQHNEHQKILIDALKNGRQIMLTTHSGNIV.................... 378
2 -22.600PF11398.8; Q6LIW4_PHOPR/1-374; Protein of unknown function (DUF2813 topsan)  ali follow..  13  1MHLERIEVSGFRGIKRLSLSFNQ-LSVLIGENAWGKSSLLDALIALAVNTEFYTFKFSDF-HDKQTNIQIVLHWKEDFAGEHKARRYKAFSPTWVTRDGIKHLYYQLSATNQYDKVTTERFFLDRNGTKIECEDTDKLVKHMILHPVVRIRDARRLRDDTLEQAIQHSDEQAKKLRIERRLDNTCRRLITQPGHVNSGELKSSVNALRTLVDHYFAFTPHNRSSHFNRVHFPSYSQYGENPLE----------------------------------QLTQPQMSKQSRLVLMGLLNAYIRAVELKRISRPIMILEDPEGRLHPTVLHQAWTFVDSPMQKILTTNSPDLLSIVPLGSIKKLIRQPDRTQ. 346
3 -20.200PF13476.6; Q6C910_YARLI/6-233; AAA domain  ali follow..  14  1....KLSIQGIRSFERETITFNKPLTLIVGQNGSGKTTIIECLRYATTGDLPPHSKGGAFIHEKEVLGQVKLAFTNVNGIQMIQLMASNNGERTTVSTRCAELDAQMPLYLYVIFCHQEESLWPLSEPAVLKKRFDEIFE---------ALKFTKALDSIKSLRKEKNVEIKLQTQTTEYLKAD-KDRADKAAEKANLLLERIE...................................................................................................................................................................... 228
4 -19.000PF13555.6; Q0A6A1_ALKEH/19-80; P-loop containing region of AAA domain  ali follow..  26  1..LQRLEVFNWGTFHDWSLQPGGDNSLLTGDIGSGKSTLVDAITTLLVPAQRITYNKAA....................................................................................................................................................................................................................................................................................................................... 59
5 -18.200PF04310.12; MUKB_ECOLI/2-227; MukB N-terminal  ali follow..  12  4GKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYL.......................................................................................................................................................................... 220
6 -13.800PF13514.6; D8PEH4_9BACT/1-216; AAA domain  ali follow..  14  1MKLARLLLFAFGPFTNKTLDFSSSLHVIYGPNEAGKSSALRAMTDLRFGIPLRSPDDF---VHPAGDLRIGGVFIDQTGR-PVGLIRRKGRGTTLSGLDVRTEQTD-------------------PGFTVDSGLERELTGGLDRQEFEALREGGAVLLNGEGDLGSALFEASAGTSGIAALLAALDTDAKKLYSQHGRAQNAVINEARRQLDEQRKAWREAQTK.................................................................................................................................................. 212
7 -13.700PF10088.9; B1ZRI5_OPITP/447-570; Uncharacterised protein conserved in bacteria (DUF2326 topsan)  ali follow..  16  8................................................................................................................................................................................................................................................................ERYALKADTKTVKGRRVYEFQSFNTNYSSGKKQGEISCFDIAYTLFADDEGIPVFHFLLNDKKELMHDNQLVKIAHLVNARGIQFVASILQDKLPDRLSQSDKLFRI....... 124
8 -12.700PF13304.6; A0ZCH2_NODSP/23-347; AAA domain, putative AbiEii toxin, Type IV TA system  ali follow..  10  1........................VTLLIGNNNSGKSNLLTGIQHFCLVRRGRPGNINKTVNVHRDLYPHRYRLAADNEPMGFIITWNNLKGSIIYE--------------------------ENRHFPESASCKEKITIRLDSADEKIITSGHDQSTNLMALRQDLEDNASLQTAEKQLCKEFFGDFANTYSYHFQPAFLKGLVKDEQM-GNLDDAPHEIGKSDYIKIPAELGSTGLGLQAVVKYIKEKEERTRFTALMRRFENNFQGVRYNEKISKLVDSVSDGFMKAAAISLLASL-------YRPPSLILLEEIENGVNPGNIQELMHWIWQMTQFIITSHSPSVLR................... 325
9 -11.800PF13558.6; B3PE30_CELJU/966-1055; Putative exonuclease SbcCD, C subunit  ali follow..  22  33..........................................................................................................................................................................................................................................................................................GSGGEHRTPLYVIFGAALAAAYGKSRGSNIMLLDEAFEKMDAQNVRATADYLNA.................................. 90
10 -11.500PF02463.19; SMC_BACSU/2-1172; RecF/RecN/SMC N terminal domain  ali follow..  15  1.FLKRLDVIGFKSFERISVDFVKGVTAVVGPNGSGKSNITDAIRWVQSARSLRGGKMEDIIFAGSDLAEVTLTLDNDDHFLPIDFHYRSGESEFLINNQPC-RLKDILGKEAFSIISQGKVEILSSKAEDRRSIFEEAAG---------VLKYKTRKKKAENKLFETQDNLNRVEDILHELEGQVEPLKIQASIAKD-------------YLEKKKELEHVEIAL................................................................................................................................................. 228
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.