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Query: gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNNLEKELLDNFKKNITQYAKQLEISIEKVYDEKGSVNAQKDIQNLLSEYANRQEIGEIRFIDKDQIIIATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVYNIPVKVDKKVIGNIYIESKINDVYNQLNNINQIFIVGTAISLLITVILGFFIARTITKPITDMRNQTVEMSRGNYTQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTIVQETGFVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVIEDGDWDELast
1 -44.900PF02518.26; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase  ali follow..  35  1.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GDSTRLQQVVWNLLSNAVKFTKNGGRVEIRL--ECVDSQAEIKVSDTGKGISPDFLPHVFESFRQADATITRKFGGLGLGLAIVRHLVELHGGTIYAESPEDLGATFTVRLPL.......... 112
2 -22.100PF16736.5; Q65G91_BACLD/33-148; Single Cache-like  ali follow..  16  1......................................SSYDAKLSSHIEKEAALVASLANG-------ENMKSSEQGAILEKASRELDSRVSLIDTKGQVLFHFGGR----AEEQSVIKEALESDLNGEGGG---FRINPDDE-SVYRYVQPLKDDGNVNGYILISTP....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 116
3 -21.700PF00512.25; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain  ali follow..  29  2.......................................................................................................................................................................................................................................................................................................................................................................................MTINLSHIHHEFRTPLTAIIGFARMLRDELYGKNPKQHQYVQGTLNSAEHLLSLVNDFLDLSKIDAR...................................................................................................................................................................... 69
4 -16.100PF00672.25; P71914_MYCTU/462-514; HAMP domain  ali follow..  34  2.........................................................................................................................................................................................................IAHAMVRPIRRLEVGTQKISAGDYEVNIPVKSRDEIGDLTAAFNEMSRNLQT................................................................................................................................................................................................................................................................................................................................................................... 53
5 -13.800PF13596.6; C1CZ44_DEIDV/745-850; PAS domain  ali follow..  10  1........................................................................................................................................................................................................................................................................MKNLLDSVGIATVFLDNNLRVKRFTPRITEVVSLMSVDL-GRPITDIASNLRYDILAEDIQRLIPYETEVQTKDGRWFLMRISPYRTFDNTIDGAVVVFTNID................................................................................................................................................................................................................................................. 106
6 -13.600PF12860.7; Q5QY86_IDILO/624-738; PAS fold  ali follow..  10  1............................................................................................................................................................................................................................................................................LENLAQGISVVDAELRLVAWNKRYMDLFQYPEGMVKGQPIATLIRDGLVNKRLRYMQLGSAHRFIRRRADGRVIEMVGNPLPTG-----GFVTSFTDITSHVETQQ.......................................................................................................................................................................................................................................... 115
7 -13.000PF10090.9; Q20YL4_RHOPB/92-213; Histidine phosphotransferase C-terminal domain  ali follow..  9  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................LGDAQNMARGHLEDDKTKIEWNLPRILL---PKNKVKLLLNMLVIAQQTIPRGGVLTVEAVGEGDAMGFRVAASGLNARTQTNIVDML-------SGAHAGSIDAHAVQPYYTRLLAQACGFSVSLAPAGEA.................... 122
8 -12.800PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase  ali follow..  16  3..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PHSALMDIIDNSVAADALNVKLYVDLVEGQRNNVARYRVVDDGKGMDEDGIKNAF-KLGSDANYKQNSLSKYGMGL---KSAGFSLGLRIQIISKTEGQLTRKYFLDRKVIEARNEYV 120
9 -12.700PF13188.7; Q82V22_NITEU/99-167; PAS domain  ali follow..  18  1......................................................................................................................................................................................................................................................................ERLQRATSALPEGIVILGDKDQIEWCNSAAERHLGLNLEMDAGQHITRMVRQVRFVAYLDM............................................................................................................................................................................................................................................................................................. 61
10 -12.700PF10144.9; SMP_YERPE/1-162; Bacterial virulence factor haemolysin  ali follow..  12  1MARAKLKFRLHRTAIVLICLALLVLLMQGASYFSLSHQLARSEQVEELAQTLAKQVAFSLSPIMDSGDDNIDSQKVDAILQQLTQSSRILDASVYQIDGTLVASAGENVKV--------------------RDRLALDGKRPGSYFNHQIVEMIAGNSGPSGFLRMTLDTHVLATESKQVDN.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 162
11 -11.700PF14501.6; E3GJI1_EUBLK/332-441; GHKL domain  ali follow..  17  6..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LCVILGNLIENAVRQQDGARFVHVTASFTS-KRDFCIMVENSFDH----EIQYDKNGNCLSSKRITSAAQEGGIGLLSIDSIVKKYNGTLRREIEKNT--KVLILLE........... 110
12 -11.000PF00989.25; PHY_ADICA/739-864; PAS fold  ali follow..  14  2.......................................................................................................................................................................................................................................................................DYKAIVQSLNPPIFGADEYGFCSEWNAAMEKLSNWRREEVLGKMLVGEIVVTKLMIVLNDAVNGQESEKFPLVFYDR-ALLIASKRTDADGRITGVFCFLHTA.................................................................................................................................................................................................................................................. 126
13 -10.900PF08448.10; Q9A599_CAUVC/22-132; PAS fold  ali follow..  15  1............................................................................................................................................................................................................................................................................VEASQDCIRVISADGYLEYMNAQGKFLLEIEDFENRHQYWPDMWPLESVEQALRAAMAGNAVAFRAAKGAPRWWDTTVSPILEG-GRVIRVLATSRDVTGER.............................................................................................................................................................................................................................................. 110
14 -9.160PF17581.2; YKP9_KLULA/2-442; Family of unknown function (DUF5483 topsan)  ali follow..  10  37....................................................................................................................................................................................................................................................NKIVQKSYMNRFPYSEPKKDYSIALYSKNKWYCLKDGVGSYISIQKEKPQIKDLTITEIKYEPYLVIYKLDFEYHIMMTILHCDERKEGIILFNEMKIYVYNGLFSYKGNKIEDFELFVNEFNSQYKENYYKTWCKAKRENQQEWPL-----FTNIKIKDSIEFPNNSDKYVGLARRNDDNLIPLIPKIYRKNHYEN-GLPIDEEENIPYSFIKEKYKNIKYHEDEKIIEVDYNNNVVKQKDMAEYYCNKLIQKIEEPVKLPKIEAQI-LNKRNERVEVLIDNEWKNLGNRIDG-TLPWNYKHIIHDYNKLGRLKKGKIMDLTHIG-IVNENGTDIIT.......................... 416
15 -9.010PF13581.6; A9B3A3_HERA2/9-137; Histidine kinase-like ATPase domain  ali follow..  16  8........................................................................................................................................................................................................................................................................................................................................................................................................................................................................LGALCKFAYQAALDAGLNEHTAWEIELA------VDEAATNIIQHAYSAERPG---DVRLVCGRDGSRFVVRLFDRGVPFDPETVPP--------SSIETREAG--GLGMYLMGRMMD.................................. 110
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.