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Query: gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLYLDGETLTIEDIKSFLQQQSKIEIIDDALERVKKSRAVVERIIENEETVYGITTGFGLFSDVRIDPTQYNELQVNLIRSHACGLGEPFSKEVALVMMILRLNTLLKGHSGATLELVRQLQFFINERIIPIIPQQGSLGASGDLAPLSHLALALIGEGKVLYRGEEKDSDDVLRELNRQPLNLQAKEGLALINGTQAMTAQGVISYIEAEDLGYQSEWIAALTHQSLNGIIDAYRHDVHSVRNFQEQINVAARMRDWLEGSTLTTRQAEIRVQDAYTLRCIPQIHGASFQVFNYVKQQLEFEMNAANDNPLIFEEANETFVISGGNFHGQPIAFALDHLKLGVSELANVSERRLERLVNPQLNGDLPAFLSPEPGLQSGAMIMQYAAASLVSENKTLAHPASVDSITSSANQEDHVSMGTTAARHGYQIIENARRVLAIECVIALQAAELKGVEGLSPKTRRKYEEFRSIVPSITHDRQFHKDIEAVAQYLKQSIYQTTACHLast
1 -129.000PF00221.19; HUTH_IDILO/11-471; Aromatic amino acid lyase  ali follow..  38  1.........LQLSELRDWFYQHQTLKLSDEAKDNIATSAKTVADVLEQGRVVYGINTGFGLLANTRIPPERLTDLQRRIVLSHAAGTGDLMEDSVVRLMLLLKINSLSRGFSGVRQVLVDALIKLLNAEVYPCIPEKGSVGASGDLAPLAHMVLPLVGEGTVRHNGKVLNAEEGLKIAGIEPFELAPKEGLALLNGTQASTALALAGLFRIERNFHAAIVVGATSVEAAMGSRAPFDERVHAVRGQPGQIKAAEMLRHVLTDSSEIAKDHEEKVQDPYSLRCQPQVMGAVLDQIEHASGILVREANGVTDNPLVFSEE--QDIISGGNFHAEPVAMAADILAIAASEIGALSERRSALLIDSHLS-KLPAFLVNDGGVNSGFMLAQVTAAALASENKTLAHPASVDSLPTSANQEDHVSMATFAARRLTDIAKNVSDIIAIEWLEAAQGLDFRRPLKGAAAVETAFNCLRE................................. 461
2 -5.760PF12787.7; I0JKA1_HALH3/5-233; EcsC protein family  ali follow..  15  67.........................VNPEWTLEEREQRLEGILKQYKQTAAFEGAGTGFGGFWLGLADFPLFLSIKMKFLFDAGQLYGFNVDSYEERVYLLDVVLDWDKIPQSRKQIDWKTLQIEYRVKLLQLFPGIGAVGYIANGRLLQHLG............................................................................................................................................................................................................................................................................................................................................................... 217
3 -5.670PF07315.11; D5DV79_BACMQ/9-101; Protein of unknown function (DUF1462 topsan)  ali follow..  10  2...................................................IYGAEIVCASCVNLPSSKDTYDWLEAAISRKYP------------QPFAITYVDINEPHTDPEKAAFAKRVIE--EDLFYPVVVINGEIVGEGNPK..................................................................................................................................................................................................................................................................................................................................................................... 84
4 -4.660PF02945.15; Q854C9_BPMOM/61-142; Recombination endonuclease VII  ali follow..  16  8....................................................YGITPDLEEQGGRCALCQRANGTTKALAVEHDHKTGV------VRGICCGPCNLGVLGHARDDIAFFERAIDYLNS........................................................................................................................................................................................................................................................................................................................................................................................ 82
5 -4.650PF03101.15; Q93Z68_ARATH/84-172; FAR1 DNA-binding domain  ali follow..  12  6....................................................YATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRDKVIAMILIRKENSGK--------VITKFVKEHNHSLMP.................................................................................................................................................................................................................................................................................................................................................................................... 89
6 -4.430PF18061.1; R7G6K2_9FIRM/783-929; CRISPR-Cas9 WED domain  ali follow..  12  2.........................................................................................................................................................................................................................................SVADETIYSTRVIDGKEKVVKKYKDIYDPKFLNNAYQEKYLHDPQTFDQIVKVVNYYFEEMSKSEKYFTKDKKGSGTNPLSLYRDEHGMLKKYSKKGDGPAITQMKYFDGVLGNHIDISAH...................................................................................................................................................... 136
7 -4.160PF13393.6; G2IXI8_PSEUL/10-315; Histidyl-tRNA synthetase  ali follow..  11  2............................ADILPATARQVESAKAAMLELFRTAGY--------------ELVLPPLIEYADALVSEGDSALDIKTFKLDLGLRAD--------ITPQVARIDAHLLSNRTGVTLCYAGSVSGLMSSREPLQVGAELYGYAGIEADLEIIEMLATLRQVGVDKLRLDVGH-IAIFRGLAAAAGLAAEDTRELFGALQSKDIATVREL--VAEVAEPYKSAFLALPELYGPRQVLDKARTRLPSLPEVELGLMQLTADLAELRGDFYHTGLMFA---------------------AYAPGWSEALARGGRYDNVGRKFGRARPATGFS.............................................................................................................................................................. 300
8 -4.160PF16466.5; I0GXH2_ACTM4/44-177; Domain of unknown function (DUF5047 topsan)  ali follow..  15  1.........................................................................................................................................GEVRLDSGQALRSQLSLEIDGTGLW------QYGSDLLTPYG----EVFVERGIAYGNGAVEWVSLGYHRINTIEQDVPPN---GPIEVTAVDRMAAIVDSKLTSPVQFGAARTNASVVAQLVTEA................................................................................................................................................................................................................................................. 115
9 -4.060PF03033.20; U80A2_ARATH/195-339; Glycosyltransferase family 28 N-terminal domain  ali follow..  11  5..........................................................................................................................................IVGTRGDVQPFVAIAKRLQDYGHRVRLATHANFKEFVLTAGLEPLGGDPKVLAGMVKNKGFLPSGPSEIPIQRNQMKDIIYSLLPACKEPDPDSGISFKADAIIANPPAGHTHVAEAL........................................................................................................................................................................................................................................................ 126
10 -4.020PF00946.19; Q6YIR9_FDLV8/10-1113; Mononegavirales RNA dependent RNA polymerase  ali follow..  752VSAVIQGDN----QSIAVTTRVPVRMNYNQKKTECYKSTIRYFETLRKVMGGLGHNL----KLNETIISNQFFIYSKRIYFD-----GSILPQGLKTISRCVFWSE----------TLVDETRAACSN-----ISTSLAKAVENGISPLLCYLLNAWKTLQQLHISLAFSINPTITKDLYGPILSSQDWMIIAVIVPSQLGGFNYMSLSRL----------------FVRNIGDPLVAALADVKRYIEIGLLTTAALTKFTTQVPGDSTELDWASDPYSAN-----LPHSQSVTTVIKHVTARSVLSKSPNPML-------------GLFHENTDEEDHDLARFLIDREIILPRVANVILDQSVTGARSAIA------------------------GLLDTTKTLIKNTANKGGLSNRTVSKLLYHDYQQFIVFNKIL.................................................................. 1104

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.