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Query: gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVTQLILPIRTYLast
1 -55.600d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  27  1..................................................................................................................................QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDY............................................................................................................................. 122
2 -52.100d5w7za1 d.131.1.0 (A:1-122) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  18  1MLKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAV--------QVVSEGECTVSTKTLNDIVRKLPDSELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAMDSI....................................................................................................................................................................................................................................................... 122
3 -50.700d5w7za2 d.131.1.0 (A:123-248) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  34  1..................................................................................................................................NPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKEFCSASTDGHRLSISWVTLEKQIKNFGVILPQKSAEEILKIVKDPNEDIEILLSSNKIKFICNNTSMLSKLIDGTFPDY............................................................................................................................. 126
4 -50.700d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21  1............................................................................................................................................................................................................................................................RRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRG-VRLYVSENQLKITANNPEQEEAEEILDV-TYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR.. 121
5 -50.600d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  30  1............................................................................................................................................................................................................................................................KRVIPETFKTKVVVSRKELRESLKRVMVIASKGSES-VKFEIEENVMRLVSKSPDYGEVVDEVEV-QKEGEDLVIAFNPKFIEDVLKHIETEEIEMNFVDSTSPCQINPLDISGYLYIVMPIR.. 121
6 -49.400d5wcea3 d.131.1.0 (A:251-372) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  27  2.............................................................................................................................................................................................................................................................RVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRS-VKLAVEPGRITLTVRNMEAGQAVEEVEV-DYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPVDPGVKYVLMPLR.. 121
7 -49.300d4k3la1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  30  1.MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAL-------VQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD........................................................................................................................................................................................................................................................ 121
8 -48.800d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  22  2..................................................................................................................................ESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIEN-EEEASFLLSLKSMKEVQNVLDNTTETITVRYDGRRVSLSTNDVETVMRVVDAEFPDY............................................................................................................................. 123
9 -47.600d5wcea2 d.131.1.0 (A:119-250) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  30  2..............................................................................................................................MSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTGETKLRAVATDGHRLALAEMPAPGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALTSKVIDGAFPDY............................................................................................................................. 132
10 -46.700d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  23  1.MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNA-------AEISGEARFVVPGDVIQKMVKVLPDEITELSLEGD-ALVISSGSTVFRITTMPADEFPEIT......................................................................................................................................................................................................................................................... 119
11 -46.500d5w7za3 d.131.1.0 (A:249-379) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  27  1............................................................................................................................................................................................................................................................STFIPESSSSKLVINRKMFADSIERIAIITVEKFRA-VKLSLSRETLEISAVGEARGNAKEVINSSYNSDESLAIGFNPQYLEDVLKAVKSDVVELYFSDVSAPVLIKFPENPKDIFVVMPVKV. 131
12 -13.100d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  1MIDVIMTGELLKTVTRAIVA---------LVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSITKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRI....................................................................................................................................................................................................................................................... 122
13 -10.300d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  1................................................................................................................................................................................................................................................................PEELPAKIVMDAGEFKKAIAAADKISDQ-----VIFRSDKEGFRIEAKG-DVDSIVFHMTETEFNGGEARSMFSVDYLKEFCKVAGGDLLTIHLGTN-YPVRLVVGGRAKVEYILAP.... 118
14 -10.200d3p91a2 d.131.1.0 (A:128-254) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  15  2...............................................................................................................................................................................................................................................................IPEQSDAIITLSSAEFLKITKDFSALGDD----SITIGCTKNEVTLTTKG-AMCETCMTLSALENVNKDVTASFALKQISEFAKSAPADNVKLSLSGQAPLIMEFKGEACVLKFYLAP.... 125
15 -9.900d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  16  2...............................................................................................................................................................................................................................................................IEEQYDSTLSLPSSEFSKIVRDLSQLSDS-----INIMITKETIKFVADG-DIGSGSVIIKPFVDMDQPVDLTFGAKYLLDIIKGSSSDRVGIRLSSEAPALFQFDLKSGFLQFFLAP.... 126
16 -9.800d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  2...............................................................................................................................................................................................................................................................IPEEYSCVVKMPSGEFARICRDLSHIGDA-----VVISCAKDGVKFSASGETSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPSSTVTLSMSADVPLVVEYKIADMGHLYYLAP.... 127
17 -9.540d2ix2b2 d.131.1.0 (B:127-245) automated matches {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  13  1..................................................................................................................................................................................................................................................................EFPFKAQLLTITFADIIDELSDLGEV-----LNIHSKENKLYFEVIGDKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRSDSMELYFGSQIPLKLRFKLPQEGYGFYIAP.... 116
18 -9.400d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  20  1................................................................................................................................................................................................................................................................PEPFTAKVVVLGEVLKAAVKAASLVSDS-----IKFIARENEFIMKAEG-ETQEVEIKLTLED--QEETKSAYGVSYLSDMVKGLGADEVTIKFGNEMPMQMEYYIRDEGRLFLLAP.... 120
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.