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Query: gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIKLast
1 -30.600g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Pyrococcus furiosus [TaxId: 2261]}  ali 3D-neighbors follow..  14  1MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRI---------------------------------------------------------------------------TRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESXAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL------SGGERIALGLAFRLAMSLYL---AGEISLLILDEPTPYLDEERRRKLITIMER-PQVILVSHDEE...................... 269
2 -20.900d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  16  2.RLVGLELSNFKSYRGVTK-GESNFTSIIGPNGSGKSNMMDAISFV-RSNHLRSNILKDLIYRGVLSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQ--YKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHEYLSGGEKTVAALALLFAINSY-----QPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-FIVISLKNTMFEKSDALVGVYRQQQENSSK 418
3 -19.200d5h68a_ c.37.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 272567]}  ali model 3D-neighbors follow..  17  1MFLKRLDVIGFKSFDRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVQSAKSLRGAKMEDVIFAGSEVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCRLKDI-------DLFLDSGLGKEAFSIIGQGRVEEILSSKPEERRTIFEEAAGVLKG-----------------SGGGSGEEMKKRFLTTFEQIRAHFGEVFGELFGGRADLRLT-----------DPNDLLETGIDIVAQPPGKKLQHLSLLSG---------------------GERALTAIALLFSILKV-----RPVPFCVLDQVEAALDEQRYAQYLKRFSRDTQFIVITHRKGTME................... 305
4 -19.200d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  2GKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYL.......................................................................................................................................................................... 218
5 -8.590d2qi9c_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  2IVMQLQDVAESTRLGPLSGEVRAGILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQR--LLDEPMNSLDVAQQSALDKILSALSQQGMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA....................................................................................................................................................................... 228
6 -7.920d2ihya1 c.37.1.0 (A:1-259) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  3IQLDQIGRMKQGKLKKISWQIAKGDKWLYGLNGAGKTTLLNILNAYEPATS------------------------------------------------------------GTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV----------------GMSAKAQQYIGYL---------------------------------------------------------------------STGEKQRVMIARALMG---------QPQVLILDEPAAGLDFIARESLLSILDSLSDMIYVTHFIEEITANF---SKILLLKDGQS.. 222
7 -7.860d4hzia_ c.37.1.0 (A:) automated matches {Leptospira interrogans [TaxId: 267671]}  ali model 3D-neighbors follow..  12  42...............................................................................................................................................................KSTLVNLIYGMIWATSGTIRLFQETYGEIAIQDLRKRIGILDSSQQENSIQRKLTVKDTILTGLFHTIGYYRDPSPEEETKTLQILKDSDLLSKKDQLYNTL----------------------SSGEKKKILFLRSIVN---------EPDFLIMDEPCSSLDLTAREDFLGFLKEYHSSLYITHRPEEIPDFY---SKAVLLKEGKV.. 221
8 -6.810d3gfoa_ c.37.1.0 (A:) automated matches {Clostridium perfringens [TaxId: 195103]}  ali model 3D-neighbors follow..  13  2.........................................................................................................................................................DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYS-RKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNAKPTHCLSFGQKKRVAIAGVLVM---------EPKVLILDEPTAGLDPMGVSEIMKLLKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVI. 220
9 -6.790d2pzea1 c.37.1.12 (A:387-645) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  28.................................................................................................................................................................................FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDI--AEKDNIVLGEGGITL----SGGQRARISLARAVYK---------DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 208
10 -6.620d2cbza1 c.37.1.0 (A:642-871) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  25.................................................................................................................................................................................FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNL----SGGQKQRVSLARAVYS---------NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-TRILVTHSMSYLPQVDVIIVMSGGKISE 207

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 8 9 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.