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Query: gi|15922996|ref|NP_370530.1| DNA gyrase subunit A (SAV0006) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEEDIQQSSDEDEELast
1 -110.000d3ilwa_ e.11.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  56  1..............................VGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDATLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRII................................................................................................................................................................................................................................................................................................................................................................................................................ 463
2 -64.500d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  17  246.....DPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFSNNIYLLLPNGAFGTTGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELE-------------QMHPWFRGWTGTIEEIEPLRYRMYGRIE------QIGDNVLEITELPARTWTSTIKEYLLLGLSNDKIKPWIKDMEEQH-DDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGRIWSLTKERYQKLLKQKQEKET.................................................................................................................................................................................................................................................................................................................................................................................................................... 723
3 -36.200d4g3na_ b.68.10.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  35  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGY-TDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDLRPMGRATSGVQGMRFNIDDRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAE............................................................................. 309
4 -36.000d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}  ali model 3D-neighbors follow..  27  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDL-TDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK--ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKFI............................................................................... 304
5 -32.300d1wp5a1 b.68.10.1 (A:1-313) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  23  1....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MVASEDVIVTVTKDGYVKRTSLRSYAASNGQDFA-----MKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDF-ELNGYFLFVTRNGMVKKTELKHYKAQRYSPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITS-KDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEAEDKTE........................................................................ 312
6 -28.400d3ku8a_ e.11.1.1 (A:) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  52  1...........................................................................................................................................................................................................................................................................................................................................................................TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVALYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADR......................................................................................................................................................................................................................................................................................................................................................................................................................................... 135
7 -6.540d1twfa_ e.29.1.2 (A:) RBP1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  233.............................MILTCLP-----VPPPPVRPSISFNESQRGEDDLTFKLADILNISLETLEHNGHHAIEEAESLLQFHVAT---YMDND-GQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS--------RTVISGD--PNLELD-QVGVPKSIAKTL-PEVVTPY-------------NIDRLTQLVNGPNHPGAKYVIRDSGDRIDLRYSKRAGQLQYGWKVERHIMDNDPVLFNRQP-SLHKMSMMAHRVKVIPYSTFRNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPL-------QIVSPQSNKPCMGIVQDTL-RKLTLRDTFIELDQVLNMPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSFGVVEKKTVGS-SNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDT--IADGPTMREITETIAEAKKKVLD-----------------VTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGKGSFINIAQMSEGKRIAFGFVDRTLPHFSKDDYFVENSYLRGLTPQEDTAVKTAETGYIQRRLVKALETTRNSLGNVIQFIYGEDGMDAAHIEKQS.................................................................................................................................................................................................................................... 881
8 -5.710d1y2ma_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungus (Rhodosporidium toruloides) [TaxId: 5286]}  ali model 3D-neighbors follow..  11  59VKDSDEIRSKIDKEFLRSQLSMSVYGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENSLPL---RGHSAVRLVVLEALTNFLNHTPIVPLRGTISA-SGD---------SPLSYIAAAISGH-KEKILYAREAMALFNLEPVVLGPKEGLGLVNGTASASMATLALHDAHMLSLLSQSLTAMVEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTNFTQLTEMLNAGMNRGLPSAAEDPSLSYHCKYTSELGHLANP-VTTHVQPAEMANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFDELVEKVNKTLAKRLEQTNSYDLVPRWHDAFSFAAGTV------------------VEVLSSTSLSLAAVNAWKVAAAESAISLTRQVRETFWSAAST................................................................................................................................................................................................................................................................................................................................................................................................................... 625
9 -5.690d4c2ma_ e.29.1.2 (A:) RNA polymerase I subunit A190 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  579....................RHIKNRDVVLMNRQ-PTLH---KAGHKRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTP--SGSPVRGLIQDHISAGVWLT-SKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTLPPTIFPYPLWTGKQIITTVLLNVTPPDM-GALLCGILSQYGASKYGIVHSLHEVYGPE--VAAKVLSVLG-ATAFTCGMDDLRLTAEGNLKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQSNVNVSQIMCLLGQQALEGRRKTLPSFKPYETDYVKGRFYSGIKPQEYYFHCMAGRE-----IDTAVKTSRSG----KQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKK................................................................................................................................................................................................................................................................................................................................................................................................................... 1107
10 -5.370d5fava1 c.7.1.0 (A:53-846) automated matches {Desulfovibrio alaskensis [TaxId: 207559]}  ali model 3D-neighbors follow..  14  299.ADIDSGRLTEYEAFDLAGCMLVKMSVNMCVGGVTREGHDATNDLTYMLMDAVRHVRISPQKYLKKIVDVIRSGMGFPAVHFDDAHIKMMLAKARDYCIELVLNHGV-KVTPDMGDLSQYDTYEK--FEAAVKEQIRWITKNTSVATVISQRAHRE--LAPKPLMSLMYEGAGGAMYNFGPGVVWSGLATYVDSMAAIYDDRKYTLAQLNEALKA-DF-------------------AGYDQILA--------------DCLAAPKYGNDDDYADMIAADLVHFTETEHRKYKTLYSV-NGRRAWMPLSDGISPTAIIKSVSKMANDNMNIGMVH-GLLDTPEGENGLITLIRTACMLQFNYLDNEL---LLDAQKHPEKYRDLVVRVAGYSAFFVEL-----CKDVQDEIISRTMLHG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 793
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.