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Query: gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATHLSFRQGVQECIPTLLGYAGVGISFGIVASSQNFSILEIILLCLVIYAGAAQFIMCALFIAGTPISAIVLTVFIVNSRMFLLSMSLAPNFKTYGFWNRVGLGSLVTDETFGVAITPYLKGEAINDRWMHGLNITAYLFWAISCVAGALFGEYISNPQTLGLDFAITAMFIFLAIAQFESITKSRLRIYIVLIIAVIVMMLSLSMFMPSYLAILIAATISAALGVMMERLast
1 -6.940d1pp9g_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  1........................GRQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN...................................................................................................................................... 73
2 -5.390d3h0oa_ b.29.1.2 (A:) automated matches {Fibrobacter succinogenes [TaxId: 833]}  ali model 3D-neighbors follow..  15.........................VQYGKFEARMKMAAASGTVSSMFLYQNGSEIA-VDIEVLGKNPGSFQSNIIT-SEKHHAVSPAADQAFHTYGLWTPNYVRWTVDGQEVRKTEGGQVSNLTGTQGLRFNLWSSESAAW-----VGQFDESKLP--LFQFINWV................................................................ 163
3 -5.210d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}  ali model 3D-neighbors follow..  16  4........................SMSLGASYDAQQAN------ITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVYYGYRAWGP........................................................................................................................ 84
4 -5.100g1qd6.1 f.4.2.1 (A:,C:) Outer membrane phospholipase A (OMPLA) {Escherichia coli [TaxId: 562]}  ali 3D-neighbors follow..  11  120........................DVEMGYNHDSNGRSDPTSRSWNRLYTRLMAEN-----------------WLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSG--YGESLIDQTRVGVGVMLNDLF........................................................... 254
5 -4.920d4ikva_ f.38.1.3 (A:) Microbial PepT or POT {Geobacillus kaustophilus [TaxId: 1462]}  ali model 3D-neighbors follow..  13  40.........GMRAILVY---YMYYEVSKGGLGLDEHLALAIMSIYGALVYMGG--WLADRVFGT-----AVFYGGLLIMAGHIALAIPGGVAALFVSMALIVLGTGLLKPNVSSIVGDMYKPGDDRRDAGF-----IFYMGINLGAFLAPLVVGTAGMKYNFHLGFGLAAVGMFLGLVVF................................................... 202
6 -4.810d1wjja1 b.40.4.3 (A:8-139) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  15  6....................................................KPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFT................................................................................................................. 71
7 -4.740d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1.................................................YGNMTEDHVMHLLQNADPLKVYLKGSFPENLRHLKNTMETID-WKVFESWMHHWLLFEMSRHSLEQKPTDAPPK............................................................................................................ 75
8 -4.690d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}  ali model 3D-neighbors follow..  25  36..............................................................................EYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWR------------------GLGITQSLGWE........................................................................................ 82
9 -4.660d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}  ali model 3D-neighbors follow..  15  7.....................................................TEKLVGSLLGPGAPSVELFTSAMLMTGRRSELRDLITDTLRTLHSSGEVALIRTLMRTGWQLRA---------------GIDVESKAFW--SAIFGLVI............................................................................... 88
10 -4.620d4bpza1 b.29.1.0 (A:136-383) automated matches {Zobellia galactanivorans [TaxId: 63186]}  ali model 3D-neighbors follow..  79LNSKFAFTYGVRAKLPSKKGTWPAIWTLGANSNETG---YFGEQYGNAEWPACGSIDILEQNGWDKESTIAHFSDEYQNLGGTTPITNASGSFHVYSLEWNASAMKVFLDDTLVYELKNSQNTPYNAPHYLL-----------LNIAMGGTLGGDIPEDDIFEIDYV................................................................ 244

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 8 9 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.