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Query: gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SKVQLPDVVVRWLSFIPITLFTALVIDSIIQQTPHGEGYTLNIPYIIALIPTVILSIITRSLTITIISGIVIMATLRFFFLast
1 -5.600d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Pea (Pisum sativum) [TaxId: 3888]}  ali model 3D-neighbors follow..  19  8SPFEMPPCGTSACRCIPVGLVIGYCR...................................................... 33
2 -5.200d1o75a3 b.120.1.1 (A:7-206) Tp47 lipoprotein, N-terminal domain {Treponema pallidum [TaxId: 160]}  ali model 3D-neighbors follow..  18  137EEYKITNVKVHGMKFVPVAVPHEFVEDSRVTENTNGLKTMLTEDSFSARKVSSM.......................... 200
3 -4.750d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  21  27............................................YFMVGAMGLLSSAGAKSTVETFISSMTA........ 54
4 -4.560d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  1.......WQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLF. 72
5 -4.440d3raoa1 c.1.16.0 (A:2-348) automated matches {Bacillus cereus [TaxId: 222523]}  ali model 3D-neighbors follow..  15  63................AWTTAAALAAVTDRLEIMTAVRPGFHNPAVTAKMAANIDQLSNGRFTLNVVSA........... 115
6 -4.350d1dq3a4 d.95.2.2 (A:227-335) PI-Pfui intein {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  7  1....IPPQILKEGKNAVLSFIAGLFDAEGHVSNKPGIELGMVNKRLIEDVTHYLNAL....................... 53
7 -4.300d1jvaa3 d.95.2.2 (A:582-698) VMA1-derived endonuclease (VDE) PI-SceI {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  7  1GVKNIPSFLSTDNIGTRETFLAGLIDSDVTDEHGIKATIKTIHTSVRDGLVSLARSL....................... 59
8 -4.210d2x42a2 c.23.11.1 (A:320-599) Beta-glucosidase middle domain {Thermotoga neapolitana [TaxId: 309803]}  ali model 3D-neighbors follow..  5  148GDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRI......... 218
9 -4.080d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  10  2........IDKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALELTNLRRVDKHAKGDYAEALIAKAWLM... 74
10 -4.030d1pp9e2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  13  36...........................................SYLVTATTTVGVAYAAKNVVSQFVSSMSA........ 64
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.