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Query: gi|15923006|ref|NP_370540.1| replicative DNA helicase (SAV0016) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFYRGAHQHIFRAMMHLNEDNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNVQYYTDIVSKHALKRRLIQTADSIANDGYNDELELDAILSDAERRILELSSSRESDGFKDIRDVLGQVYETAEELDQNSGQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDMYTVGIFSLEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSRFTIAVGKLSRTKIFIDDTPGIRINDLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRASDNRQQEVSEISRTLKALARELECPVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGGDEDDDDDGGFEPQTNDENGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMMLast
1 -55.600d1cr1a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}  ali model 3D-neighbors follow..  17  1........................................................................................................................................................................MRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGE--SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKEGRPVSITDLRGSGALRQLSDTIIALERNQ-------------------QGDMPNLVLVRILKCRTGDTGIAGYMEYNKETGWLE......... 273
2 -46.400d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  43  1.........PPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRE................................................................................................................................................................................................................................................................................................................................................................... 102
3 -17.700d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  18...............................................................................................................................................................................................PLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGELPTGPVIYLPAEDPPTAIHHRLHALGAHLS----------------AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEE----ENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG-AAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMT---------SAEAEEWGVDDDQRRFFVRFGVSKANYGAPFA....................... 247
4 -17.200d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  1.....................................................................................................................................................................................EIIQITTGSKELDKLLGGIETGSITEMFGEFRTGKTQICHTLAVTCQL----------PIDRGGGEGKAMYIDTEGTFRPERLLA--------ERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGADPKKPIGGNLRKGRGETRICKIY....................................................................... 218
5 -15.800d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}  ali model 3D-neighbors follow..  13  1..................................................................................................................................................................................EHQAIAKMRTMIEGFDDISGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV-FVTFEETPQDIIKNARSFGWDLA-KLVDEGKLF----------ILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVF-----QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY----------GPIARYGVEEFVSDNVVILRNVL--------------------EGERRRRTLEILKLRGTS.......................... 216
6 -15.200d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}  ali model 3D-neighbors follow..  14  1..................................................................................................................................................................................QRSSNVRVSSGVVRLDEMCGGFFKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEESRAQLLRNA-------------------YSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVS------NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMG---------AHSITDSHISTITDTIILLQYVE--------------------IRGEMSRAINVFKMRGSW.......................... 207
7 -13.000d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  2..................................................................................................................................................................QKALAAALGQIEKQFGKGSIMR-ISTGSLSLDIALGGLPMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDP-----YARKLGVDIDNLLCSQPDTGE---------------------------QALEICDALARSGAVDVIVVDSVEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG---GNALKFYASVRLDIRRIGAVKEGENVVGSE--------------TRVKVVKNK............................. 245
8 -9.680d4gi7a_ c.37.1.6 (A:) automated matches {Klebsiella pneumoniae [TaxId: 507522]}  ali model 3D-neighbors follow..  11  22...........................................................................................................................................MTLTEDEITRLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPY----IISIAGSVAVGKSTTARVLQALLSRWPEHRHVELITTDHPNSVLKERGLMK---------KKGFPQSYDMHRLVKFVSDLKSGVPQA-TAPVYSHLIYDVIPDGDKTVAQPDILILEGLNVLQSGMDYPHDPHHVFVSDF-----SIYVDAPEELLKSWYINRFLTDPDSYFHNYAKLSKEEAVDIATSLWNEINLMNLKE-----------------LPTRERASLIMTKSANHSVNQVRL.................... 307
9 -8.330d1yksa1 c.37.1.14 (A:187-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  12  2.......................................................................................................................................................................................................LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCHAT--------------------LTYRMLEPTRVVNWEVIIMD-----------EAHFLDPASIAARGWAAHRARANESATILMT....................................................................................................... 134
10 -7.710d1ihua2 c.37.1.10 (A:308-583) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  22............................................................................................................................................................................................................LIMLMGKGGVGKTTMAAAIAVRLA--DMGFDVHLTTSD-PAAHLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAGKRL-SPCTEEIAVFQAFSRVIREAGKRFVVMD-LLLLDATGAAKKMGEKGHFTTPMMLLQD-PERTKVLLVTLPETTPVLEAAN----LQADLERAG................................................................................ 211

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 8 9 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.