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Query: gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSLKTVIGMNNKEHIKSVILALLVLMSVVLTYMVWNFSPDIANVDNTDSKKSETKPLTTPMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHVRRDHNLMIPDLSSDFTLFDFTYDLPLSTYLGQVLNMNAKVPNHFNFNRLVIDHDADDNIVLYAISKDRHDYVKLTTTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAPSKPEKLKTYRMVFNTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKYHYKNLSEDEASSSKMEETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGYPTFNKEGSNQIQVTWGEKGVFDYRRSLLRTDVVLNSEDNKTLPKLESVRSSLANNSDINFEKVTNIAIGYEMQDNSDHNHIEVQINSELVPRWYVEYDGEWYVYNDGRLELast
1 -4.960d3jbre_ f.63.1.1 (E:) L-type calcium channel Gamma-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors follow..  13  1MSPTEAPKVRVT---FCILVGIVLAMTAVVSDH--WAVLSPHMENHNTTCEAAHF.............................................................................................................................................................................................................................................................................................................................................................................................................. 51
2 -4.450d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10.....................................................................................................................................................................................................................................................................................................KTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAG-PLYNQQKTHVL---AVNGEIYNHQ----ALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE... 160
3 -4.380d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  5...VQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQR-----MMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQR......................................................................................................................................................................................................................................................................................................................................... 120
4 -4.310d2oeba1 a.70.2.1 (A:2-153) Hypothetical protein AF1862 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  2IREIEQERASFAFKVVSDIKAPTIILNNGLGATLAFFLSKLEKPIDDVDYKSINPESFGNAENIAYAFLYKHLSTWLAEGNGKDSAFSGLTNGEDPLKYIMEKTAIDVAISTEE................................................................................................................................................................................................................................................................................................................................................... 134
5 -4.300d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  71..............................................................................................................................VPTPITASLSHNRIREILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTD................................................................................................................................................................................................................................................................................... 122
6 -4.170d5l8r1_ f.43.1.0 (1:) automated matches {Pea (Pisum sativum) [TaxId: 3888]}  ali model 3D-neighbors follow..  21  133.KDPKKFHEYKIKE-VKNGRLALLAFVGICVQQSAYPGTGPLENLAT----------LADPWHNTIGNVLIP............................................................................................................................................................................................................................................................................................................................................................................................. 193
7 -4.150d3ag3b1 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  27  59.QEVETIWTI-----LPAIILILIALPSLRILYMM.................................................................................................................................................................................................................................................................................................................................................................................................................................. 87
8 -4.100d1veka1 a.5.2.1 (A:8-78) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  12  2.............................................................................................................................................................................................................................................................................................................................................................................................EELLPDGVPEEVMESAQPVANEEIVAQLSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD.......... 64
9 -3.980d2oi8a2 a.121.1.1 (A:87-216) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  86...........................ALHRALSFWSRLHGVLSLELAGQFTGMGFDSALLFEAELKDLLGP............................................................................................................................................................................................................................................................................................................................................................................................. 130
10 -3.960d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  1MEKILDLLMSFVKEDEGKLDLASFPLRNTTAGAHLLLKTENVASGIEVSRMFLEKMGLLSKFNVEDGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFS............................................................................................................................................................................................................................................................................................................................................................... 103

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 8 9 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.