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Query: gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst TTTLAQSDERVNLVELGVYVSDIRAHLAQYYMFQAAHPTETYPVEVAEAVFNYGDFTTMLTGIAPDQVTRMITGVPWYSSRLKPAISSALSKDGIYTIANLast
1 -5.990[S] COG2431 Predicted membrane protein  ali follow..  15  150.....................QLRNSGMTLKQIVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTALAMASGFGWYS--LSGILLTESFGPVIGSAA. 225
2 -5.260[H] COG4062 Tetrahydromethanopterin S-methyltransferase, subunit B  ali follow..  15  38..........ERMDKLDGIAEDLLNSLSPSKPLLNSWPGR--ENTSYMAGIYGNAFYGIVVGLAFSGLLALII----FIQRLIEG............... 106
3 -5.010[A] KOG2560 RNA splicing factor - Slu7p  ali follow..  20  46...................................................................IPEYMSKAPWYLKSEQPSLK............. 65
4 -4.980[I] COG3239 Fatty acid desaturase  ali follow..  16  246..........................................................VLLSQNYHLVHHLHPSVPFYRLRTWRRNEEAYLERNAAISTV 288
5 -4.970[R] KOG2501 Thioredoxin, nucleoredoxin and related proteins  ali follow..  19  7................QVLVSKLVGKTAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDSFNINMTNMPWYEDRTRQDLCRIFNVKLIPA... 99
6 -4.820[L] KOG0542 Predicted exonuclease  ali follow..  12  62..................LVLDFEATCQDNWKGPMHPVQEIIEFPVVQLSTADRRFHQYVKPTECPRLTSFCTSLTGIIQ.................... 127
7 -4.750[R] COG2071 Predicted glutamine amidotransferases  ali follow..  12  159................TSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADG----MIEAVEGDNLPSWYLGVQWHPELMFQT............... 223
8 -4.730[C] KOG3469 Cytochrome c oxidase, subunit VIa/COX13  ali follow..  11  9IRRQFGASAARNMSGTAAVAGEHSGGYKVWLSFFVAVPAVGLCMLNAYLKHQEEHDKPRQEFVKYDYLRRREKRFPW....................... 87
9 -4.590[S] COG5381 Uncharacterized protein conserved in bacteria  ali follow..  77...............VSYIANELLENAVKYITLHLYDHKLIFETSNISPLPTTIDYENFIKVLLEADPLEL------YMERLEKSALEDCEASQ...... 159
10 -4.450[O] KOG2754 Oligosaccharyltransferase, beta subunit  ali follow..  16  350.....GDDIQLEFVRIDPFVRTFLKKKGGKYSVQFKLPDVKVDYNRLGYTHLYSSTQVSVRPLQHTQYERFISAYPYYASAFS................. 434

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.