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Query: gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TTTLAQSDERVNLVELGVYVSDIRAHLAQYYMFQAAHPTETYPVEVAEAVFNYGDFTTMLTGIAPDQVTRMITGVPWYSSRLKPAISSALSKDGIYTIANLast
1 -6.790IDP92617 hypothetical protein SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757] SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  17.........RNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTS 118
2 -5.200IDP06433 gene: E3R; E3R [Monkeypox virus Zaire-96-I-16] NP_536527 [Monkeypox virus Zaire-96-I-16]  ali follow..  151.............QMVNDMIFNQDSFLKYLLEHLIRSHYRVSKHITIVRYKDTEELNLTRICYNRDKFKAFV--FAWFNGVSENE............... 220
3 -5.070IDP91407 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase [Vibrio vulnificus CMCP6] VV1_0729 [Vibrio vulnificus CMCP6]  ali follow..  24  146...........................QKYHLFKTSFPT-------------------LLERLSDRQIAAYLGITPVSLSRIKNRST............. 186
4 -4.710IDP02795 hypothetical protein GBAA5281 [Bacillus anthracis str. `Ames Ancestor`] GBAA5281 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  31..................LVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVN-VVWNPPWSKERMSRMAKIALG......... 102
5 -4.310IDP04101 gene: minE; cell division topological specificity factor MinE [Clostridium perfringens ATCC 13124] CPF_2392 [Clostridium perfringens ATCC 13124]  ali follow..  14  24..ILIHDRGELSDEVLDKIRLEILDVLSKYVEI----ENEDVDITVTKSNPIEGESPSLVANIPIKNIKG.............................. 87
6 -4.240IDP02637 gene: pagK; PagK [Salmonella typhimurium LT2] STM1867 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  1......................MKHVKSVFLAMVLILPSSLYPALTIAADSQDHKKEETIKPMPQKWCNLWPAGIPWFK..................... 61
7 -4.190IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  14  3............RLTNKLAVSNLIKNRKLYYPFALAVLLAVTITYLFYSLTFNPKIAEIRGGTTIQAVTLASAIIVLYANSF.................. 80
8 -4.110IDP90142 unknown [Monkeypox virus] MPXV_ZAI1979_005_188 [Monkeypox virus]  ali follow..  15  24....................DDVRQCLTEYISYAYRNRQCAGQLYGTLLSFKDDDVRELVKNMPWDNVKDCTEIIRCYIPDEQKTIREISAIIGLCAYAA 112
9 -3.980IDP05111 putative phage-related cell wall hydrolase [Clostridium difficile 630] CD2187 [Peptoclostridium difficile 630]  ali follow..  15  218...................YDDKNESIKDHAKFLATNKR-----YKNNGVFDAKTYIYQAKALEKAGYST--NGNSIYAARLIELIQQ............ 283
10 -3.940IDP04391 gene: cotJB; spore coat protein CotJB [Clostridium perfringens ATCC 13124] CPF_1067 [Clostridium perfringens ATCC 13124]  ali follow..  11  2...........KALELLDDIQKLQFYAVELNLYLDNFPENDYKEISSKLSELIERFECEYGPIRNFGQAYVENPVAWIEQ.................... 75

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.