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Query: gi|6319250|ref|NP_009333.1| Putative permease, member of the allantoate transporter subfamily of the major facilitator superfamily; mutation confers resistance to ethionine sulfoxide; Seo1p (YAL067C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYSIVKEIIVDPYKRLKWGFIPVKRQVEDLPDDLNSTEIVTISNSIQSHETAENFITTTSEKDQLHFETSSYSEHKDNVNVTRSYEYRDEADRPWWRFFDEQEYRINEKERSHNKWYSWFKQGTSFKEKKLLIKLDVLLAFYSCIAYWVKYLDTVNINNAYVSGMKEDLGFQGNDLVHTQVMYTVGNIIFQLPFLIYLNKLPLNYVLPSLDLCWSLLTVGAAYVNSVPHLKAIRFFIGAFEAPSYLAYQYLFGSFYKHDEMVRRSAFYYLGQYIGILSAGGIQSAVYSSLNGVNGLEGWRWNFIIDAIVSVVVGLIGFYSLPGDPYNCYSIFLTDDEIRLARKRLKENQTGKSDFETKVFDIKLWKTIFSDWKIYILTLWNIFCWNDSNVSSGAYLLWLKSLKRYSIPKLNQLSMITPGLGMVYLMLTGIIADKLHSRWFAIIFTQVFNIIGNSILAAWDVAEGAKWFAFMLQCFGWAMAPVLYSWQNDICRRDAQTRAITLVTMNIMAQSSTAWISVLVWKTEEAPRYLKGFTFTACSAFCLSIWTFVVLYFYKRDERNNAKKNGIVLYNSKHGVEKPTSKDVETLSVSDEKLast
1 -44.600IDP04335 putative transport protein [Salmonella typhimurium LT2] STM1543_1_428 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  4....................................................................................................................................KTMGWLIVFLLFIVYMLNYMDRSALSITAPL-IEKELGFNAAEMGMIFSAFFIGYALFNFIGGWASDKVGPKTVFLIAALLWSVFCGLTGLVTGLWTMLIVRVLFGMAEGPVSAAGNKIINNWISRKESATAIGIFSAGSPLGGAVSGPIVGLLALSL-------GWRPAFGIIFLFGLVWVLLWYFIVSDKPTMSKR--LAPEERIDFENHEDVILSDDGRATPS------LGYYMKQPMVWATTLAFFSYNYILFFFLTWFPSYLNHSLHLDIKEISIATVIPWVIGAIGMVLGGVCSDVIYRITG-LILGVCLAGAAVCVAVSGTVSTIGSAITLMSVSLFLLYLTGPIYWAVIQDVVHKDKVGSVGGAMHGLANISGIIGPLVTFIVQFSGKYDYAFYLAGAIAIVSSLLVFVF........................................... 412
2 -23.700IDP04215 gene: smvA; methyl viologen resistance [Salmonella typhimurium LT2] STM1574_1_495 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  7..........................................................................................................................................TLVIIVLVYIPVAID-ATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSHTASWLIATRVLLAIGAAMIVPATLAGIRATFCEKHRNMALGVWAAVGSGGAAFGPLIGGILLEHF-------YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLMLIIAILLLVYSAKTALKGHLSLWVISFTLLT-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPYEAGVFMLPVMVASGFSGPIAGVLVSRLGLR-LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPAEKAAAAGAIETMAYELGAGLGIAIFGLAARHAFIWSHSVALSSAGSMLLLLAVGMWFSLAKAQRR................................ 495
3 -19.600IDP95453 set236a-055 [Undefined organism]  ali follow..  11  3...........................................................................................................................NKLASGARLGRQALLFPLCLVLYEFSTYIG-NDMIQPGMLAVVEQYQAGIDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVL-------PWEGMFVLFAALAAISFFGLQRAMPET--------ATRIGEKLSLKEL----------------GRDYKLVLKNGRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHAYLWLSIYAFGIGLANAGLVRLTLFASDMSKGTVSAAMGMLQMLIFTVGIEISKHAWLNGGNG-------LFNLFNLVNGILWLSLMVIFLKDKQMGNSHEG........................... 410
4 -18.600IDP95412 set236a-014 [Undefined organism]  ali follow..  11  14................................................................................................................................VRGVQSRDFLLL---CGSFFICGATTTGLVGTHLIPMSHEHGIPEVTAANMLALIGIFDLFGTMASGWLSDRYNNRWLL-YGLRGLSLIFLPYAYGTGLFGLGLFVVFYGLDWVATVPPTVRLAADLFGKRNVGTVYAWIFAAHQLGAATAAFGAGALRTWLG------DYQVSFMLAGGLALLAAGMVLRI................................................................................................................................................................................................................................................................................. 198
5 -7.060IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali follow..  10  1..........................................................................................................................................................................MHFDSGLLALLFVIIALFIGALVRHLLKGQVPYTVALLILGIAIGLAHRGNAFTDNYTLILASEIDPHLFLFLFLPTLIFESAFAMEVHLFRRMFTQIVILAVPGLMLAIWLTAELVAWVLPEHWQWSWALCLMFGALISATDPVAVVALLKEVSSRKRLETLIEGESAIVFFSLFYGWVLMEFSNPGEAITAPPWQAVAQ-----FFVVVFVGLAVGLILGGLCILWIDRVFNDPMIEISLTIAAAYSAGVVAVVTLAIMFASVGRTRIHMANTLIFLLVGILVAIRVPLDDKEAWLLFVLYLGIMAIRACSITVFMPILKRIGIGITYEKAVVLCWGGLRGAVSLALAMTVASSDIIPKQIGDHVLFLCAGIVVLTIL........................................... 414
6 -6.740IDP90853 putative glycerol-3-phosphate acyltransferase PlsY [Yersinia pestis CO92] YPO0647 [Yersinia pestis CO92]  ali follow..  4.................................................................................................................................................................................IALGMIIFAYLCGSISSAILVCRVGATNVLRIGGRTAAVAVLLFDILKGMLPVWIAYLLHIPPLYLGLTAIAACLGHIYP----------FKGGKGVATAFGAIAPIGLLSGYSSLGAIVS--YVWWFKPQFTFPVAMLSCLILMRHHDNIQR-LWRGKEGKIWDKLRKKKQKTPAEEAAEL.......................................................................................................................................................................................................................................... 211
7 -5.880IDP92691 hypothetical protein SAUSA300_0346 [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_493060 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  179..........................................RIAIHKSPLDTAKVSHAWTTFKSNIDHVDKKSNTSANDQYHVSQLNDALEKAIKAIDDNQLSDADAALTHFIETWPYVEGQIQTKDGALYTKIEDKIPYYQSVL-------DEHNKAHVKDGLVDLNNQIKEVVGHSYSFV--------------------------------------------VMIIFLR---GL-EVLL---IVMTLTTMTRNVKDKKGTASVIGGAIAG-LVLSIILAITFVETLGNSGILR-----SMEAGLGIVAVILMFIV---------GVWMHKRSNAKRWNDMIKNM---------------YANAISNGNLVLLATIGLISVLREGVEVIIFYMGMIGELATKDFIIGIAL----VILIIFALLFRFIVKLIPIFYIFRVLSIFIFIMGFKML......................................................................................................................................... 505
8 -5.800IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  11...........................................................................................................................PGDGLRKIKYKYHVCLIVIFSVLIRLLFLTDRYL------------------CDEASSVLISRHSVDNLLFHAAFDVHPPLYYL--LLHDWILWGDSIAAVRSLSLLFGI-IALT--RTALLAGWFAALMPMAVHYSQETRM---YALMGMLTLAAALALMMWIKTPTHNR----YLVAYALLMTFSFYTHYFTLFTLIAHWIAVTILSCQSHKTA-LLTHLAQLRAGNDIGWIPPVTWRDLPAMYWHFFTGNNGQGFPSFILWLAVGGFIGTVGRISLCNGEYERYQLILFCNLVIPVMLVFIISWWMPLFIDRYFFFSSLSIPPLLAVLLTRAKKAVCGFWFILFTLLFGY..................................................................................................................... 374
9 -5.770IDP05431 hypothetical protein lmo1224 [Listeria monocytogenes EGD-e] lmo1224 [Listeria monocytogenes EGD-e]  ali follow..  12  461................................QSARTALDAEKQTIEQGEKTLAAKNQELQQAKIAYQEGLTKYQDGLEKISLAKQQLAVGKQTGSLELQSALAKLNTGQAEYDKNFALFKKEKAKAEAKL--------------------------AEKDVQIGQQKLALKVPKYYVLDRNDNPGYSEYKENADRLLSTAFPIFFFLIAALV--CLTTMTRMVEE-------RTQIGTLKA---------FG--YSNGSIILKYLVYSIASVIGSVLGILIGFQFFPNI-----FNAYKSMYEMPSLLALFVALFATLMRPKAPKIGKRIFL--ERISFIWKRMN----------TSKVTARNLFRYKQRMLMTVLGVAGCTALILTGFGLRNSISDIAKMQYGQIMKYDAAIY.................................................................................................................................................................................. 817
10 -5.760IDP90350 hypothetical protein CT456 [Chlamydia trachomatis D/UW-3/CX] CT456 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  239.....................AAAALNSLRGSSYSNYDDAAADYEPIRTTENIYESIGGSRTSGPENTSDGAAAAALNSLRGSSYTTGPRNEGVFGPGPEGLPDMSLPSYDPTNKTSLLTFLSNPHVKSKMLENSGHFVF-----FILVPNGNWDQVCSIKVQNGKTKEDLDIKDLENMCAKFCTGFSKFS----------------------W---------DSLVEPMVSAK--AGVASGGNLPN-TVIINNKF-------KTCVAYGPWNSQEASSGY-FGGIFEKANDFNKINW....................................................................................................................................................................................................................................................................................................... 489

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.