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Query: gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNSATSETTTNTGAAETTTSTGAAETKTVVTSSISRFNHAETQTASATDVIGHSSSVVSVSETGNTKSLITSGLSTMSQQPRSTPASSIIGSSTASLEISTYVGIANGLLTNNGISVFISTVLLAIVWLast
1 -6.390IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  1883..QVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDE-DACSRRAESSNESRTTAGAKLRQQQLDLAG........................ 1988
2 -6.280IDP06531 gene: fms7; LPXTG family cell surface protein Fms7 [Enterococcus faecium DO] AFK59141 [Enterococcus faecium DO]  ali follow..  16  1MNSLRTKQVLKGALVILFAVSTSVPQWTVYGESISSESESREVETTETTDAGNETKSSTSQTETNTETTVETSVTSTDQETTATTDNQQTEEATAT................................ 96
3 -6.170IDP04706 30S ribosomal protein S12 [Bacillus anthracis str. Sterne] BAS0105 [Bacillus anthracis str. Sterne]  ali follow..  17  44..................................................................RGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIGIGHNLQEHSVVLI........... 95
4 -5.860IDP06504 Surface protein from Gram-positive cocci, anchor region [Enterococcus faecium DO] EAN10897 [Enterococcus faecium DO]  ali follow..  12  16....AVSTSVPQWTVYGESISSESESREVETTETTDAGNETKSSTSQTETNTETTVETSVTSTDQETTATTDNQQTEEATATKMSNDESSSAKVSDKENGTENDDIG..................... 118
5 -5.100CPX_91702_91677 Complex of EZRI_HUMAN with M1_I34A1 [Undefined organism]  ali follow..  20  720..........NRMGAVTTEVAFGLVCATCEQIADSQHRSHRQMVTTTNPLIRHENRMVLASTTAKSSEQAAEAMEVASQARQMVQAMRTIGTHP-----SSSAGLKNDLLEN--LQAY.......... 827
6 -4.750IDP95381 set238a-018 [Vibrio cholerae]  ali follow..  22  3...............................................SDIIMFWKKKSHDIDAGDTRKFLTGEAVFFSPKPLPSIAQETIVQSPDILEIDTYLDIGQRNQGKAWQVQMVNTIIGFGV. 92
7 -4.740IDP04061 gene: YPCD1.07; hypothetical protein YPCD1.07 [Yersinia pestis CO92] YPCD1.07 [Yersinia pestis CO92]  ali follow..  27  15............................................................................................NIANIFVPDLSG-ANRFLACSLLETYLSSVLLLMLW 51
8 -4.550IDP05358 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0685 [Bacillus anthracis str. Ames]  ali follow..  13  286.KKKQEQASKPAEPVANNNSKVEPVQPSKPTAGGREIYVHATAYTADPAENGYGPGQQVYSAWGGYNLTANPGMKLIAVDPSVIPLGSRV--------VEGY-GEAGGAIKGHKIDVLMPDKASSSKW 409
9 -4.450CPX_91712_91677 Complex of HSP7C_HUMAN with M1_I34A1 [Undefined organism]  ali follow..  19  780..........NRMGAVTTEVAFGLVCATCEQIADSQHRSHRQMVTTTNPLIRHENRMVLASTTAKAQMAGSSEQAAEAMEVASQARQMVQAMRTIGTHPSSSAGLKNDLLEN................ 883
10 -4.420IDP06419 gene: ORF65; ORF65 [Human herpesvirus 8] YP_001129422 [Human herpesvirus 8]  ali follow..  13  84..............................ERADRVSAASAYDAGTFTVPSRPGPASGTTPGGQDSLGVSGSSITTLSSGPHSLSPASDILTTLSSTTETAAPAVADARKPPSG.............. 167

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.