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current user: public |
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Query: gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae], from S.cerevisiae |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . | |||||||
# | Score | Template | Links and tools | %id | First | MAGEAVSEHTPDSQEVTVTSVVCCLDSVVEIGHHVVYSVVTPLIVAVLIDTMAGEAVLEHTSDSQEEIVTTVVCSVVPLVCFVVSVVCFVISVVEIGHHVVYSVVAPLTVTVAVETIAEEMDSVHT | Last |
1 | -6.200 | CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism] | ali follow.. | 20 | 801 | PRPANLGERQASTVRLHVKESNCKQPRER----------------------KANERNIVKDLKRLENKINVIICLVV--VILAVLLLVTVLSILHIG............................. | 873 |
2 | -5.460 | IDP04069 30S ribosomal protein S6 [Bacillus anthracis str. Sterne] BAS5327 [Bacillus anthracis str. Sterne] | ali follow.. | 9 | 5 | ...........................................EIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYMILNVNANAEAINEFDRLAKINEDI.. | 85 |
3 | -4.520 | IDP04273 gene: YPCD1.23; hypothetical protein YPCD1.23 [Yersinia pestis CO92] YPCD1.23 [Yersinia pestis CO92] | ali follow.. | 17 | 5 | .................TTLIICSKPAEIAVGHFITMSIKAILLYSVFIQVKFNYGMIEYKDTPDRKLKTTIA------------------SSQLMGHNLTYEDYAMKKRLVIA............ | 102 |
4 | -4.330 | IDP05096 putative cytosine/adenosine deaminase [Clostridium difficile 630] CD0015 [Peptoclostridium difficile 630] | ali follow.. | 11 | 18 | ......AYKAYNKKETPIGAIIVKDNQIIARAHNLTETLKDSTAHAEILAIKQASEKLGGWRLTDCDLYVTM----EPCIMCSGAIVNSRIKKLIIG............................. | 104 |
5 | -3.930 | IDP92768 gene: cas1; Cas1 [Vibrio phage ICP1_2011_A] AGG09389 [Vibrio phage ICP1_2011_A] | ali follow.. | 18 | 198 | ........................YNKFLTLGNYYAYGIARSSLWALGIDNSFP---LLHGSTRRGGLVFDVADIIKTSII............................................. | 251 |
6 | -3.820 | IDP95229 gene: wafA; WafA [Acinetobacter baumannii] AHB32216 [Acinetobacter baumannii] | ali follow.. | 8 | 200 | FLGQPLKDIDKNFDVLALKKLLVMEGINYHFRHPIKSSYIFEDFFAKELSKYRKVIIYTLSS--------TAALNIISL--DNVEVRLINNDAINIRYPDLVRLFINSGAVL.............. | 311 |
7 | -3.710 | IDP02208 gene: ffh; signal recognition particle protein, Ffh [Francisella tularensis subsp. tularensis SCHU S4] FTT0964c [Francisella tularensis subsp. tularensis SCHU S4] | ali follow.. | 11 | 171 | IVTAAIKTAKTKLIDVLIIDTA--IDNDMMDEIKQIHKIAKPIETFFTVDSMTGQDAAVTAKAFNDALELT-------------GVILTKTDGDARG--AALSIREITGKPIKFLGVGEKTDALE. | 283 |
8 | -3.700 | IDP01220 gene: ffH; signal recognition particle protein BA_3983 [Bacillus anthracis str. Ames] | ali follow.. | 16 | 172 | IAKQAIAKAKEDHHDYVLIDTA--IDEELMDELAKVKEVAKPDEIFLVVDAMTGQDAVNVAQSFHEQLGLT-------------GVVLTKLDGDTRG--AALSIKAVTNTPIKFAGMGEKLDALE. | 284 |
9 | -3.700 | IDP90422 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_471 [Chlamydia trachomatis D/UW-3/CX] | ali follow.. | 14 | 101 | ..............................................VNLSCTSCRMDLDFRGEWKKNASIYIRNEQEPI-----------------------TIMLPKDIGVVVYT.......... | 147 |
10 | -3.680 | IDP02129 gene: ffh; signal recognition particle protein [Coxiella burnetii RSA 493] CBU_0450 [Coxiella burnetii RSA 493] | ali follow.. | 15 | 171 | IAKAALKQAEKQFMDVLILDTA--IDNVLMEEMKAISDAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLT-------------GVILTKLDGDTRG--AALSMRMITQKPIKFVGVGEKIDALE. | 283 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06. |