current user: public
If you have questions about the server, please let us know.

Query: gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MAGEAVSEHTPDSQEVTVTSVVCCLDSVVEIGHHVVYSVVTPLIVAVLIDTMAGEAVLEHTSDSQEEIVTTVVCSVVPLVCFVVSVVCFVISVVEIGHHVVYSVVAPLTVTVAVETIAEEMDSVHTLast
1 -6.200CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  20  801PRPANLGERQASTVRLHVKESNCKQPRER----------------------KANERNIVKDLKRLENKINVIICLVV--VILAVLLLVTVLSILHIG............................. 873
2 -5.460IDP04069 30S ribosomal protein S6 [Bacillus anthracis str. Sterne] BAS5327 [Bacillus anthracis str. Sterne]  ali follow..  9  5...........................................EIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYMILNVNANAEAINEFDRLAKINEDI.. 85
3 -4.520IDP04273 gene: YPCD1.23; hypothetical protein YPCD1.23 [Yersinia pestis CO92] YPCD1.23 [Yersinia pestis CO92]  ali follow..  17  5.................TTLIICSKPAEIAVGHFITMSIKAILLYSVFIQVKFNYGMIEYKDTPDRKLKTTIA------------------SSQLMGHNLTYEDYAMKKRLVIA............ 102
4 -4.330IDP05096 putative cytosine/adenosine deaminase [Clostridium difficile 630] CD0015 [Peptoclostridium difficile 630]  ali follow..  11  18......AYKAYNKKETPIGAIIVKDNQIIARAHNLTETLKDSTAHAEILAIKQASEKLGGWRLTDCDLYVTM----EPCIMCSGAIVNSRIKKLIIG............................. 104
5 -3.930IDP92768 gene: cas1; Cas1 [Vibrio phage ICP1_2011_A] AGG09389 [Vibrio phage ICP1_2011_A]  ali follow..  18  198........................YNKFLTLGNYYAYGIARSSLWALGIDNSFP---LLHGSTRRGGLVFDVADIIKTSII............................................. 251
6 -3.820IDP95229 gene: wafA; WafA [Acinetobacter baumannii] AHB32216 [Acinetobacter baumannii]  ali follow..  8  200FLGQPLKDIDKNFDVLALKKLLVMEGINYHFRHPIKSSYIFEDFFAKELSKYRKVIIYTLSS--------TAALNIISL--DNVEVRLINNDAINIRYPDLVRLFINSGAVL.............. 311
7 -3.710IDP02208 gene: ffh; signal recognition particle protein, Ffh [Francisella tularensis subsp. tularensis SCHU S4] FTT0964c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  171IVTAAIKTAKTKLIDVLIIDTA--IDNDMMDEIKQIHKIAKPIETFFTVDSMTGQDAAVTAKAFNDALELT-------------GVILTKTDGDARG--AALSIREITGKPIKFLGVGEKTDALE. 283
8 -3.700IDP01220 gene: ffH; signal recognition particle protein BA_3983 [Bacillus anthracis str. Ames]  ali follow..  16  172IAKQAIAKAKEDHHDYVLIDTA--IDEELMDELAKVKEVAKPDEIFLVVDAMTGQDAVNVAQSFHEQLGLT-------------GVVLTKLDGDTRG--AALSIKAVTNTPIKFAGMGEKLDALE. 284
9 -3.700IDP90422 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_471 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  14  101..............................................VNLSCTSCRMDLDFRGEWKKNASIYIRNEQEPI-----------------------TIMLPKDIGVVVYT.......... 147
10 -3.680IDP02129 gene: ffh; signal recognition particle protein [Coxiella burnetii RSA 493] CBU_0450 [Coxiella burnetii RSA 493]  ali follow..  15  171IAKAALKQAEKQFMDVLILDTA--IDNVLMEEMKAISDAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLT-------------GVILTKLDGDTRG--AALSMRMITQKPIKFVGVGEKIDALE. 283
FFAS is supported by the NIH grant R01-GM087218-01
1 3 6 8 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.