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Query: gi|6319254|ref|NP_009337.1| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRYTATFRPLQRFVMNPFASLEGQDNISSVFFLHMQQFESQVKDRFRFPIFRLERKTFGNSCYQVETLKVKCRPRHAKSCNLLTLLFKSRTQSVLVPNFGFLILNSEPLast
1 -6.090IDP92577 serine proteinase inhibitor TgPI-2, putative [Toxoplasma gondii ME49] TGME49_008430 [Toxoplasma gondii ME49]  ali follow..  26  207................................................PMCGVDGKTYQNLC---YLQCFGVRKLHDGTCW........................... 236
2 -6.060IDP05011 hypothetical protein BA_4970 [Bacillus anthracis str. Ames] BA_4970 [Bacillus anthracis str. Ames]  ali follow..  15  33.......................ESALLNRYYSVIRQTEDQYECASVINIKRLGKNGEFVPRYEVTLQFLTFQGAHNPPNDKVTLTLEDYLDHVRIKKV......... 109
3 -5.640IDP00932 gene: nadD; nicotinic acid mononucleotide adenyltransferase STM0645 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  21  8..FGGTFDPVHYGHLKPVETLANLIGLSRVIIMRKYMLELAIADKPLFTLDERELQRNAPS-YTAQTLK-AWREEQGPEAPLAFII...................... 106
4 -5.590IDP00162 gene: tcpF; toxin co-regulated pilus biosynthesis protein F VC0837 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  18  1MRYKKTLMSIMITSFNSFAFNDNYSSTSTVYATSNEATDSRGSEHLRYPY--------------LECIKIGMSRDYLENCVKVSFPTSQDMFYDAYPS.......... 85
5 -5.510IDP90767 gene: nadD; nicotinic acid mononucleotide adenylyltransferase [Yersinia pestis CO92] YPO2607 [Yersinia pestis CO92]  ali follow..  20  14..FGGTFDPIHYGHLKPVEALAQQVGLQHIILLRLKMVELAVAGNPLFSVDSRELLRDSPS-FTIETLE-ALRKERGAEQPLAFII...................... 112
6 -5.080IDP02136 gene: metJ; transcriptional repressor protein MetJ [Yersinia pestis CO92] YPO0114 [Yersinia pestis CO92]  ali follow..  25  3.....................EWNGEYVSPYAEHGKKSKQVKKITVSIPLKVLKILTDERTRRQVNNL------RHATNSELLCEAFLHAFTGQPLPN.......... 73
7 -5.050IDP01206 N-acetylmuramoyl-L-alanine amidase, family 3 BA_2446 [Bacillus anthracis str. Ames]  ali follow..  13  61..............LNNIVSKTNSHDVDLVVSFHLNSYDTRANG---VEVLYYDQQALSAKIAAQLSKDIGWSNRGAKERKDLYVLSNTKAPAILI-ELGFIDNEAD. 149
8 -4.990IDP01427 peptide ABC transporter, ATP-binding protein VC1684 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  178...NGLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIV-------MHEGDVVESGETHEVLADPQHPITQRMIESH...................... 253
9 -4.990IDP05299 gene: nadD; nicotinate-nucleotide adenylyltransferase [Clostridium difficile 630] CD2524 [Peptoclostridium difficile 630]  ali follow..  16  33..LGGTFDPIHYAHLATAEFIRDKYDIDKIIFIRYNMTLLATESNEDFLVSKVEIERKKRT-YTIDTLK....................................... 115
10 -4.840IDP01145 oligopeptide ABC transporter, ATP-binding protein BA_0188 [Bacillus anthracis str. Ames]  ali follow..  15  177...SALDVSLQIQIVHLLQKIQREQGYTYLFIAHDLPMVHYLCEKVAV-------LYKGELVEFGNTDEVFRNPQHSYTKTLLAST...................... 252

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.