current user: public
If you have questions about the server, please let us know.

Query: gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180
# Score Template Links and tools%idFirst MPPPSRSRINKTRTLGIVGTAIAVLVTSYYIYQKVTSAKEDNGARPPEGDSVKENKKARKSKCIIMSKSIQGLPIKWEEYAADEVVLLVPTSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCVRRLGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSDVEDVLIDTLCNLast
1 -6.080IDP06515 protein of hypothetical function DUF552 [Enterococcus faecium DO] AFK58423 [Enterococcus faecium DO]  ali follow..  10  86...................................SPTKTVAKERTASRTSTQPKANLAGKITVMEPRAYSEAMAIAKRIIAGEATLV--------------NFHLVEEKQARRIV--DFLTGTVYALKRVGDEIFLCTPTGMEIDSSTAQSFADANLFDL................... 199
2 -5.920IDP00877 gene: ygeA; putative racemase STM3015 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  5  76.................AEGIVLCTNTMHKIAHVIESRCSLPFLHIADATGRAIARQGLHRVALLGTRYTMEQDFYRGRLEQQFAIETIVPEADDRARINQV----IFDELCQGTFTDASRHYYLQVIEQLAAQGVIFGCTEIGLLVPQTQSALP......................... 212
3 -5.890IDP95198 gene: wagK; WagK [Acinetobacter baumannii] AHB32695 [Acinetobacter baumannii]  ali follow..  7  2.......................................................NNNKIALVVIVYGKALEDAMTIQSLLSFE-LLIVNNGPAVIDENSAVLTSLAQKHHHVVLENQVQNKPL-DFIQQYDADYYVLFDDD---------TEINIE---YQNMLFTAQDIDIELPKIIS 122
4 -5.810IDP01905 gene: scsA; suppression of copper sensitivity protein A [Salmonella typhimurium LT2] STM1113 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  8  2.....AKQQRMGWWFLCLACVVVMVCTAQRMAGLHALQMQATASAAVVSAPSSTDDGSPVTPCELSAKSLLAAPPVLFEGA---LLLSLLAPVRVMRLPFSPPRAISPPTLRVHLRFC.............................................................. 116
5 -5.800IDP04122 putative aspartate/glutamate racemase [Yersinia pestis CO92] YPO2758 [Yersinia pestis CO92]  ali follow..  10  77.................AEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGI----ISETSRDAYRRVIKKLEAQGIIFGCTEITLLVNAQDASVP......................... 213
6 -5.540IDP91978 pneumococcal histidine triad protein D (bvh-11-2), partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100008980 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  8  2........KINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLT--VSKREGINAEQIVIKITDQGYVTYYNGKVPYDAI---ISEELLMKDPNYQLIVNEIKGGY--VIKV-DGKYYVYLKDAAHADNIRTKEEIKRQKQE.................... 159
7 -5.400IDP05267 hypothetical protein lmo0255 [Listeria monocytogenes EGD-e] lmo0255 [Listeria monocytogenes EGD-e]  ali follow..  5  2.........KKFLSILSILVLALLVTAC--------GSDSSDKKSAKKEEKMETVTYIADINGAKLEATFSHVGDNLRKVDQKMVYPLTALGLESGANLDDATKKQLEEQVASQYSAYKESKGASLETKFTDEALELTMSVDLYKADKDSVASLL......................... 139
8 -5.220IDP06121 gene: gmk; guanylate kinase [Helicobacter pylori J99] NP_223024 [Helicobacter pylori J99]  ali follow..  15  89......................................................EKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKE------MQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL.. 206
9 -5.140IDP06283 gene: gmk; guanylate kinase [Streptococcus pneumoniae TIGR4] NP_346174 [Streptococcus pneumoniae TIGR4]  ali follow..  7  90......................................................NETLDKGIDVFLEIEVQGALQVKKKVPDAVFIFLTPPDLDELQDRLVGRGTDSAEVIAQRIEKAKEE------IALMREYDYAIVNDQVPLAAERVKCVIEAEHFCVDRVIGHYQE.......... 199
10 -5.090IDP95147 hypothetical protein KP1_5095 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921607 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  8  19LPWRDLRRRQRLRYVLLLTIGIVLLGGMGLLVSRTARLQRDFLATLHTTADAQLLASLKQREQAMREAWQQHQRQRQQYQRRSALAADLPAQAWLTRLEYQGVLLTLD--------LALNLQALTSVEAALTRVAGF........................................... 158
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.