current user: public

If you have questions about the server, please let us know.

Query: gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MAGEAVSEHTPDSQEVTVTSVVCCLDSVVEIGHHVVYSVVTPLIVAVLIDTMAGEAVLEHTSDSQEEIVTTVVCSVVPLVCFVVSVVCFVISVVEIGHHVVYSVVAPLTVTVAVETIAEEMDSVHTLast
1 -8.380sp|Q9NRM1|ENAM_HUMAN(removed signalp:1-39) Enamelin OS=Homo sapiens GN=ENAM PE=2 SV=3  ali   15  24QLGQKEIMPFPEASSLQSKNTPCLKNDLGGDGNNILEQVFTPLVIGTPDEGSNPEGIQSQVQENESERQQQRPSNILHLPCFGSKLAKHHSS.................................. 129
2 -7.810sp|A4D174|CG071_HUMAN Putative uncharacterized protein C7orf71 OS=Homo sapiens GN=C7orf71 PE=2 SV=1  ali follow..  14  77................................HELGYSSIIPMMKRAFSACGTLGLIMSGIFDNPGPIKNTLKKAFTMLWSFTVYTRLESLRVALSNEEMVPFIFHLKT---TANMLSGPIST... 165
3 -7.160sp|Q9UI33|SCNBA_HUMAN Sodium channel protein type 11 subunit alpha OS=Homo sapiens GN=SCN11A PE=1 SV=2  ali   17  15LCGEWIENMWECMQEANASSSLCVI-LITVIGKLVVLNL----FIALLLNSFSNEERNGNLEGEARKTKVQLALD................................................... 87
4 -6.640sp|Q9NYV6|RRN3_HUMAN RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1  ali   16  3................................HGPFYSACQAVFYTFVFQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNK-YQLVFC....................... 75
5 -6.400sp|Q8TEQ8|PIGO_HUMAN(removed signalp:1-22) GPI ethanolamine phosphate transferase 3 OS=Homo sapiens GN=PIGO PE=2 SV=3  ali   12  6...........HGSCTWLPALLVGANTF---ASHLLFAVGCPLLLL-PEEEEEPLMEMRLRDAPQHFYAALLQLGLKYLFILGIQILACALAASILRRHLVWKVFAPKFIFEAVGFIVSSV..... 138
6 -6.230sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens GN=SCN4A PE=1 SV=4  ali   17  8LCGEWIETMWDCMEVAGQAMCLTVFLMVMVIGNLVVLN----LFLALLLSSFSADSLAASDEDGEMN........................................................... 70
7 -6.000sp|Q9UQD0|SCN8A_HUMAN Sodium channel protein type 8 subunit alpha OS=Homo sapiens GN=SCN8A PE=1 SV=1  ali   16  33LCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLN----LFLALLLSSFSADNLAATDDDGEMNNLQISVIRIK................................................. 105
8 -5.950sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A PE=1 SV=2  ali   16  24LCGEWIETMWDCMEVAGQAMCLIVYMMVMVIGNLVVLN----LFLALLLSSFSSDNLTAIEEDPDANNLQIAVTRIK................................................. 96
9 -5.890sp|Q9P1W3|TM63C_HUMAN Transmembrane protein 63C OS=Homo sapiens GN=TMEM63C PE=2 SV=1  ali   15  11..................................MAYSITCPIIVPFGL-TDRYNMYYSFAPTKLNEQIHMAAVSQAIFAPLLGLFWMLFFSILRLGSLHAITIFSLSTLLIAM............ 97
10 -5.800sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens GN=SCN3A PE=1 SV=2  ali   17  40LCGEWIETMWDCMEVAGQTMCLIVFMLVMVIGNLVVLN----LFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQ................................................. 112

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35