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Query: gi|33438755|ref|NP_878039.1| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCPRTVLLIININHWFYDKNIVRIILTFRLDSGHISDICFINKNLANALITADISLLKRHDIRCTKYIITYYQRYRNKEKGKFISLCKNTIISSSVLast
1 -5.270PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  16  286......NKLTKTKDWTYEKE-YRIVLNLKYDFNCLKGVIF-GIKTPQNKKDEIIEIIINKCHENNILDFEFYQAFYCKESKNI............. 373
2 -2.770HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  10  26..PENII----------PDRMENILYDYHLSISMGNNL---SYSDNYQKEAYKNYVFEKHHITEAEF-MVWYTRHTEELASLYKKLGER....... 102
3 -2.770HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  14  215..............................................................KCRDYGLIIIIGPEKNRIRRFFKICLS....... 241
4 -2.350HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;  ali follow..  18  7........................................IRNKLENDYLCPALR---------IQYFATSYSKSADHEGRAAIRMDGVEVLRSN. 54
5 -2.340PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]  ali follow..  19  4.......................................YIFNDSTNIPIGTVFSFVSKYDYICNKAVQDISEDLIKIELNQNVSINKIFNILKA. 59
6 -2.320PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  13  16.................EIRTVGLMIALYEKRHPETDASYAIKRLERCHFGEDKPACKHCPIHC----------YQPARREAIKAIMR........ 84
7 -2.290PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  15  12...............................QMYLEQRAAEDALFAKNYRNPAKNIDD-----CVTYILNYVQK...................... 49
8 -2.200PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  13  83....................FVEPLTYFPILGSAAMYQAFMIGNISNKLVPAAIVAQSSIGAK------------AGSKRGDLAAIGGAATMHLLS 149
9 -1.990PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  1........................................MKRFASHFLFLPAYGYLKQYAVETEESVVRIFPLTEEIENVEWLP........... 46
10 -1.830PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;  ali follow..  10  31...RELQPLLGYSQWRRFEQAIERAITSCKESGNSPEHHF--AGAGKPITGGKGAVQVVDDYHLSRFA-CYLIAQNGDPRKPEIAQAQKYFAIQT. 119

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35