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Query: gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TTTLAQSDERVNLVELGVYVSDIRAHLAQYYMFQAAHPTETYPVEVAEAVFNYGDFTTMLTGIAPDQVTRMITGVPWYSSRLKPAISSALSKDGIYTIANLast
1 -5.840PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  6  9.......................KKSIAEYLLYM-----QIEDIIRVYGCSLTRIRKEYIDKFDYTD-EQKEEEEDWFGDLVRMMNQEGCRENG...... 74
2 -3.960PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)  ali follow..  18  40LTTLPDIFRKKLGMYIAAYLEDQISELGLWQSFTAEHKR----LYGKYLPFYPTNSNYVADEINEEDIRFII----WN...................... 109
3 -3.750PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  7  44........................SLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDIQWYNILAEKVPQVFKAETAEEESQE 137
4 -3.720PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  18  167................NLPFFKIDNAAEEYKRFLLTAP.............................................................. 189
5 -3.380PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  17  114..............MYQGFSSDLMMLMGNLMQWKFRMPAIFKKALRSMTEKTVHDVCT--TVWKADDVHKTAAAVRQYKERL.................. 180
6 -3.060HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  4  31...........QPDRMENILYDYH----------------LSISMGNNLSYSDNYKNYVFEKHHITEAE-FDSSMVWYTRSLYKKLGERFRSEKKHMQEL 113
7 -2.950PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  7  118.........KRRFEALNEKYLELKKKAQPYLDALEIASEKVRAFLDAV.................................................... 156
8 -2.750HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  7  48......ESGETDTEVIQETLDEAVCGINDLQEEFDENDSEIETVARDCIG---VTVAYILEWFGIPDIEEAIRERDW....................... 116
9 -2.630PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  8  84KTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIV-----ASMNMNNLYIETATEL-FTLLNDAVAK.......................... 154
10 -2.590PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  16  1..................................................MNTETLTYLLEH-ETTQLRTVVEEFPFFQA.................... 36
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35