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Query: gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTSEPEFQQAYDEIVSSVEDSKIFEKFPQYKKVLPIVSVPERIIQFRVTWENDNGEQEVAQGYRVQFNSAKGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLDMGGGKGGLCVDLKGKSDNEIRRICYAFMRELSRHIGKDTDVPAGDIGVGGREIGYLFGAYRSYKNSWEGVLTGKGLNWGGSLIRPEATGFGLVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQYAALKVIELGGIVVSLSDSKGCIISETGITSEQIHDIASAKIRFKSLEEIVDEYSTFSESKMKYVAGARPWTHVSNVDIALPCATQNEVSGDEAKALVASGVKFVAEGANMGSTPEAISVFETARSTATNAKDAVWFGPPKAANLGGVAVSGLEMAQNSQKVTWTAERVDQELKKIMINCFNDCIQAAQEYSTEKNTNTLPSLVKGANIASFVMVADAMLDQGDVFLast
1 -2.770PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  10  2.....................................................................................................................................................................................................................................................................................................................IEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGELTAETMPLLTGEQHSLLA----YQIFRDEVMFGG-----FCQLIQNGYGGYIFDNPFAKVMRLWGAEDFSKLVYKAKK.................................... 104
2 -2.600PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  15  93..........................................................................................................................................................................................................ESIQDYEQEYENQLKDILETIIGVEDV------------SIVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKE--------------------TPVVVQTKKPDIRG--VLVVAQGVDNVQIKK--TIIEAVTRVLDVPSHRVAVAP....................................................................................... 224
3 -2.360PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  8  93......................................................................................................................................................................................................................................................................................GIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTEL--------TELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFR...................... 243
4 -2.340PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  8  3.......................................................................................................................................................................................................................................................................................................................................................TTTTNELPAEIMENGIHYTLVGDYYFPTCMLGDGKWASLYERYLQEKHPHEYVRLIWADELAALLESVQRECEEMAEAEGVNEEMKGNEQMAWVQRMEMICGRVEEVVCEEI.. 126
5 -2.150PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  10  33....................................................................................................................................................................................................................................................................................................................DIHLQPDQTSTIYNDDDEELANVMIEEWATYDGDDFMENVKPNLKST-KDAGDFDKVTILKPYSFVLVDEDKETVAELLLIDDDTLLVDDELLKGLDKELDEFLKNLLE........................................ 147
6 -2.050PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  17  4........................................................................TSASVLN---LINPEDIESQT---ILKDAAATALYGGANGVVLITTKSGRRGKTH.......................................................................................................................................................................................................................................................................................................................................... 54
7 -2.020PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  5  52...................................................................................................TIIAGVDVSF-----------SNASSAATKVNSAWKHYKLTVDFSWTYQPESNEPINEAFVWPVRLVESLSGKTKTTATSNEVDLDQDVDLSMLS----------DTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEKARSNEKLNREHV-IKYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQA---ACNAANNFLGVNVTLKLNGEDAGKVDGSSVLQWIS-FADPANPTLDTSQISSWAAELANGFNTVGSTRWWTRADGKQC---AVEGGDFGWSIDSSSLAKQVEDAINNKQTGEIEIKYSQK.................................. 362
8 -1.910PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  13  2.......................................................................................................................................................................................................................VCGAKVSLENYAEFASVTELYTDEKGCVSITIG--LGDIHVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSN--DRLALLKTLKVKDYKDVTASVLEDHLKVRES................................................ 197
9 -1.800PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  11  5...................................................................................................................................................................................................................................................................................................................................................................................VNINLANMLFRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQ------------------VITQKEVDAVIAIMG... 80
10 -1.730HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  6  8...............................................................................................................................................................................................................................................................................................................................................................................................VQSLLEKAMFQATVADFWMAGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVTVNRWKACGLL. 81
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35