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Query: gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWEQRRQKVVFSLTILVRYRLKQSMAKKISKNSRAARQSDALEPEVKDLSELPRAEKTDLTNILIRTAAKNEALLEAKISKKANKSKRGKKLNKKALEDKLDNSISSMDRDRLVKALNFTNRLDGKIAKSISRAKYIQNTRKAGWDSTNETIKKELAFLNGGLSVQAKSASEGNAEKEDEEIPEVFDSLAEDNTVQKTPTNRFGVLPDDVEELast
1 -4.440PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  97......................................................................NPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQ............................................................................. 161
2 -4.000PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  10  2.................................RVPRRSWPPRRFPPVLLSVTLKRMPQPVTALLAAMITPAVLISGAGTLIMSTSTRVGRATDRVRGTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRA........................................................................ 111
3 -3.370PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  13  77..................RNNANEYNALLNGDAADAAAVKAEQVDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSESKAAKRLDDAKTNLTAKLDEASKLLADSDGKVADN.................................................................................. 198
4 -3.090HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  10  3..............................................................................................KPKNLEQLRAEKEQVETQLAQEQHKLKRLENRKKYLEKGERQKRTHR....................................................................... 49
5 -2.990HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  11  5.............................................................................................................................KVSHQLKKLNNSSSLTKKNMTMEENTVHPARKLLL.................................................... 39
6 -2.810HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  13  7................................................................................................................VPMARTATEKLEMRGQSV--TVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQK............................................. 59
7 -2.760PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  1M--NKRLNLLLCIMSAVILYSFYAVSKDMVSGFTAGVRSADIEAKIRNDKNYANSEEYKKLMQERDESEAWARAATISFKADLNAEPATFVNQKTGKPAKVWIRTADVNYQSPRYFIAVKSLC-KLIARFRNSERNLKLIRIMAF................................................................... 167
8 -2.740HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  26  26.............................................................................................KRKDEDDMAKSTKTYEERIRA--------LEKKEQESIEATKKLIAQRKE..................................................................... 67
9 -2.580PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  122..KLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIKA...................................................................................................................................................... 181
10 -2.440HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  12  111YWGNAYTQI---LENITDCPMEESKKEQWSAEVKCLRATDVPTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPGGG.......................................................................................................................... 217

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35