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Query: gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWEQRRQKVVFSLTILVRYRLKQSMAKKISKNSRAARQSDALEPEVKDLSELPRAEKTDLTNILIRTAAKNEALLEAKISKKANKSKRGKKLNKKALEDKLDNSISSMDRDRLVKALNFTNRLDGKIAKSISRAKYIQNTRKAGWDSTNETIKKELAFLNGGLSVQAKSASEGNAEKEDEEIPEVFDSLAEDNTVQKTPTNRFGVLPDDVEELast
1 -5.290sp|Q76FK4|NOL8_HUMAN Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1  ali   13  8.WVVSKFGRVLPVLHLKNQHKRKIIKYDPSKYCHNLKKIGEDFSNTIPISSLT............................................................................................................................................................... 59
2 -5.280sp|Q8IYR0|CF165_HUMAN UPF0704 protein C6orf165 OS=Homo sapiens GN=C6orf165 PE=2 SV=2  ali   14  44.WELRRKAIKLANLRQKVTHSVQTDLSHLRRENCSQ-KDTSTQSMREDSTGVPRPQ............................................................................................................................................................ 101
3 -5.160sp|Q9Y4E6|WDR7_HUMAN WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=2 SV=2  ali   25  48VWEP--SAVLMGLLELCADAEKQLANSPAADSARSARHA............................................................................................................................................................................. 95
4 -5.020sp|Q8IX21|F178A_HUMAN Protein FAM178A OS=Homo sapiens GN=FAM178A PE=1 SV=2  ali   15  68.WNTKVPELCLGINELSSHPHNLLW-PNWTSRGRQLRQCLSLVIISKLLDEKHEDVPNASN....................................................................................................................................................... 131
5 -4.970sp|P78385|KRT83_HUMAN Keratin, type II cuticular Hb3 OS=Homo sapiens GN=KRT83 PE=1 SV=2  ali   10  17..........FSCVSACGPRPSRCCITAAPYRGISCYRGLTGGFGSHSVCGGFRAGS........................................................................................................................................................... 63
6 -4.870sp|Q8N5C1|FA26E_HUMAN Protein FAM26E OS=Homo sapiens GN=FAM26E PE=2 SV=1  ali   12  101....................................................................................................AQKEKEQLENTFLDYANKLSERNLKCFFEN-KRPDPFPMPTFAAWEAAS............................................................... 148
7 -4.750sp|Q9H4I2|ZHX3_HUMAN Zinc fingers and homeoboxes protein 3 OS=Homo sapiens GN=ZHX3 PE=1 SV=3  ali   10  4.WEDARKKMFNTVIQSVPQPTITVLNTPLVASAGNVQHLIQAALPGHVVGQ................................................................................................................................................................. 58
8 -4.690sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2  ali   14  11LIEDKKATIPVTDAEFSQAVNPQSFCTGVSLHHPTLIQSTGPLIDMSDI................................................................................................................................................................... 68
9 -4.560sp|Q4G0N8|S9A10_HUMAN Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SLC9A10 PE=2 SV=2  ali   11  14.............................................................................................................STKYKSVCCTFQHFQELTKSAASALKFDKDLANADWNMIEKAIT........................................................... 57
10 -4.510sp|Q68DN1|CB016_HUMAN Uncharacterized protein C2orf16 OS=Homo sapiens GN=C2orf16 PE=1 SV=3  ali   24  7VWEQRLPRKYLSTMLMLGNILGTTMERKLCSQTSLAERATA........................................................................................................................................................................... 52
FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35