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Query: gi|33438755|ref|NP_878039.1| Putative protein of unknown function; identified by expression profiling and mass spectrometry; Yal063c-ap (YAL063C-A) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MCPRTVLLIININHWFYDKNIVRIILTFRLDSGHISDICFINKNLANALITADISLLKRHDIRCTKYIITYYQRYRNKEKGKFISLCKNTIISSSVLast
1 -7.0901c0f_S mol:protein length:127 GELSOLIN SEGMENT 1  ali model follow..  10  40...............FFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDYLNGRAVQHREVQGFESATFLGYFKSGLK.... 117
2 -7.0404cbu_G mol:protein length:127 GELSOLIN  ali model follow..  10  40...............FFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDYLNGRAVQHREVQGFESSTFSGYFKSGLK.... 117
3 -6.7803cip_G mol:protein length:128 Gelsolin  ali model follow..  10  41...............FFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDYLNGRAVQHREVQGFESATFLGYFKSGLK.... 118
4 -6.4902vik_A mol:protein length:126 VILLIN 14T  ali model follow..  12  39...............FYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLI.... 115
5 -6.4402v6s_A mol:protein length:106 PTERIN-4A-CARBINOLAMINE DEHYDRATASE  ali model follow..  15  19.......LHKTVPQWHLTDGHLSIKRKFQFSDDHHPNWYNVYNTVDVELSTHDAAGLTEKDFALAKFMDDAAKNFEK................... 106
6 -6.3802n3o_A mol:protein length:123 Polypyrimidine tract-binding protein 1  ali model follow..  13  17..PSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKGK--------NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI.......... 88
7 -6.3301sjq_A mol:protein length:105 Polypyrimidine tract-binding protein 1  ali model follow..  13  9..PSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKGK--------NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI.......... 80
8 -6.2402ff3_A mol:protein length:150 Gelsolin  ali model follow..  10  52...............FFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDYLNGRAVQHREVQGFESATFLGYFKSGLK.... 129
9 -6.0802ad9_A mol:protein length:119 Polypyrimidine tract-binding protein 1  ali model follow..  13  24..PSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKGK--------NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI.......... 95
10 -6.0604x2z_A mol:protein length:322 Nonstructural protein 3  ali model follow..  16  84.........................LAQKWNVQYRDNFLILEWRDGNCWISSAIVLLQAAKIRFKGFLTEAWAKLLGGDPTDFVAWC......... 145

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.