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Query: gi|6319249|ref|NP_009332.1|(removed signalp:1-20) hypothetical protein; Pau8p (YAL068C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TTTLAQSDERVNLVELGVYVSDIRAHLAQYYMFQAAHPTETYPVEVAEAVFNYGDFTTMLTGIAPDQVTRMITGVPWYSSRLKPAISSALSKDGIYTIANLast
1 -8.4902jk1_A mol:protein length:139 HYDROGENASE TRANSCRIPTIONAL REGULATORY PROTEIN HUPR1  ali model follow..  12  30AQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDS-ASMMAAINDAGIHQFLTK-PWHPEQLLSSARNAAR......... 118
2 -8.4102rjn_A mol:protein length:154 Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain  ali model follow..  12  37FTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADA-QATIDAVNRGKISRFLLK-PWEDEDVFKVVEKGLQ......... 125
3 -8.1403hv2_A mol:protein length:153 Response regulator/HD domain protein  ali model follow..  16  44ARDATQALQLLASREVDLVISAAHLPQMDGPTLLARI-HQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSK-PWDDQELLLALRQALE......... 132
4 -6.9203kcn_A mol:protein length:151 Adenylate cyclase homolog  ali model follow..  21  49...............FSVIMVDMRMPGMEGTEVIQKA-RLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNK-PCQMSDIKAAINAGIK......... 122
5 -6.0801w9h_A mol:protein length:427 HYPOTHETICAL PROTEIN AF1318  ali model follow..  10  97.KSQVDNAIDTGVDGIMLVLPEYNTPL--YYKLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLV-QFVSKLGGKPW....................... 169
6 -5.7203j6b_b mol:protein length:157 54S ribosomal protein L25, mitochondrial  ali model follow..  13  2............................SYKQYFDSLPLKLKSFFQRYPPSIKYSPVSTSTK-PFLPNKHPVTQ-PKYSLRRMSDVYKLALRYG...... 74
7 -5.700144l_A mol:protein length:164 T4 LYSOZYME  ali model follow..  12  59TKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMIQQKRWDELAVNM-WYNQ.................... 141
8 -5.700146l_A mol:protein length:164 T4 LYSOZYME  ali model follow..  11  59TKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMMQQKRWDELAVNM-WYNQ.................... 141
9 -5.7002jqq_A mol:protein length:204 Conserved oligomeric Golgi complex subunit 2  ali model follow..  15  2SDSLIRDLSGLSQKMVQTLLEQIRSNYDDYLTFSNTYTDEENETLINLEKTQSDKFMTQLDHLDISNTQEIIKDVLEYLKKLDE................ 90
10 -5.6703cue_C mol:protein length:159 Transport protein particle 18 kDa subunit  ali model follow..  92........SDFKQQSYTQVLQYIYSHI--YVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMV........................ 157

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35