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Query: gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAGEAVSEHTPDSQEVTVTSVVCCLDSVVEIGHHVVYSVVTPLIVAVLIDTMAGEAVLEHTSDSQEEIVTTVVCSVVPLVCFVVSVVCFVISVVEIGHHVVYSVVAPLTVTVAVETIAEEMDSVHTLast
1 -6.9801fft_A mol:protein length:663 UBIQUINOL OXIDASE  ali model follow..  20  283...............................GHPEVYILILPVVFSEIAATFSRKRLFGYTS------------------LVWATVCITVLSFIVWLHHFVNAFFGITTMIIAIPTGVKIFNWLFT 369
2 -6.9701m56_A mol:protein length:566 CYTOCHROME C OXIDASE  ali model follow..  25  283...............................GHPEVYIIVLPAIVSHVIATFAKKPIFGYLP------------------MVYAMVAIGVLGFVVWAHHMQQSYFMMATMVIAVPTGIKIFSWIAT 369
3 -6.9301ar1_A mol:protein length:558 CYTOCHROME C OXIDASE  ali model follow..  20  275...............................GHPEVYIIILPGIISHVISTFAKKPIFGYLP------------------MVLAMAAIGILGFVVWAHHMQQAYFMLATMTIAVPTGIKVFSWIAT 361
4 -6.6902cwz_A mol:protein length:141 thioesterase family protein  ali model follow..  15  7............GYEAVFETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEA.................... 100
5 -6.2402yev_A mol:protein length:791 CYTOCHROME C OXIDASE POLYPEPTIDE I+III  ali model follow..  19  249...............................SHPTVYVMLLPYILAEVASTFARKPLFGYRQ------------------MVWAQMGIVVLGTMVWAHHMFQIAFAFFTALIAVPTGVKLFNIIGT 335
6 -5.7201fjg_F mol:protein length:101 30S RIBOSOMAL PROTEIN S6  ali model follow..  12  5...........................................EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNV.. 85
7 -5.6901qjh_A mol:protein length:101 RIBOSOMAL PROTEIN S6  ali model follow..  13  5...........................................EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLMVLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNV.. 85
8 -5.6501cqm_A mol:protein length:101 RIBOSOMAL PROTEIN S6  ali model follow..  12  5...........................................EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNV.. 85
9 -5.6203eh3_A mol:protein length:618 Cytochrome c oxidase subunit 1  ali model follow..  17  282...............................GHPIVYFWLLPAYAIIILPKQAGGRLVSDP------------------MARLAFLLFLLLSTPVGFHHQFADIHSVLTLFVAVPSLMTAFTVAAS 369
10 -5.5802bxj_A mol:protein length:101 30S RIBOSOMAL PROTEIN S6  ali model follow..  12  5...........................................EVNIVLNPNLDQSQLALEKEIIQRAAENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDAARELRIRDNV.. 85

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35