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Query: gi|6319254|ref|NP_009337.1| Protein of unknown function; may interact with ribosomes, based on co-purification experiments; (YAL064W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRYTATFRPLQRFVMNPFASLEGQDNISSVFFLHMQQFESQVKDRFRFPIFRLERKTFGNSCYQVETLKVKCRPRHAKSCNLLTLLFKSRTQSVLVPNFGFLILNSEPLast
1 -6.7005lfp_A mol:protein length:131 Bacterial proteasome activator  ali model follow..  13  14MRIGTMIKQLLEEVRAAPLDEASRNRLRDIHATSIRELEDGLAPELREELDRLTLPFNEDA----VPSDAELRIAQAQLVGWLEGLFHGIQTALFAQQMAA....... 110
2 -6.4005lzp_1 mol:protein length:180 Bacterial proteasome activator  ali model follow..  13  48MRIGTMIKQLLEEVRAAPLDEASRNRLRDIHATSIRELEDGLAPELREELDRLTLPFNEDA----VPSDAELRIAQAQLVGWLEGLFHGIQTALFAQQMAA....... 144
3 -5.8702hfq_A mol:protein length:109 Hypothetical protein  ali model follow..  14  3..................SSSSGRENLYFQGHMQIHVYDTYVKAKMHFDVFRDDKKAIEFAKQWLSSIGEEGATVTSEECRFCHSEKAPDEVIEAIKQNGYFIYKME. 98
4 -5.6201k4k_A mol:protein length:213 Nicotinic acid mononucleotide adenylyltransferase  ali model follow..  21  8..FGGTFDPVHYGHLKPVETLANLIGLTRVTIIRKHMLELAIADKPLFTLDERELKRNAPS-YTAQTLK-EWRQEQGPDVPLAFII...................... 106
5 -5.5705msm_B mol:protein length:133 Chromosome transmission fidelity protein 8  ali model follow..  21  70.................FGSLQIDGERATLFVGKKQRLLGKVT-KLDVPMGIMHFNSKDNKVELVDVMKYK-------------VIFKDRPLPIM............. 133
6 -5.5103j7o_X mol:protein length:156 Ribosomal protein uL23  ali model follow..  15  74......YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVK-------------KLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII...... 156
7 -5.3701yul_A mol:protein length:242 Probable nicotinate-nucleotide adenylyltransferase  ali model follow..  21  22..FGGTFDPVHIGHMRSAVEMAEQFALDELRLLRLAMVERAVAGVERLTVDPRELQRDKPS-YTIDTLE-SVRAELAADDQLFMLI...................... 120
8 -5.3105aa5_C mol:protein length:579 NIFE-HYDROGENASE LARGE SUBUNIT, HOFG  ali model follow..  17  11PRAQAAPGKLVEMNWDPITRIVGSLGIY----TKIDFENRRVAEYSTSSIFRYSIFMKGKDPRDSHFITSRCGDNHA----TCSVYAQNMAYGVKPPPIADWIIN... 113
9 -5.3005t2a_V mol:protein length:145 uL23  ali model follow..  16  63......FNVIRYPLTTDKAMKKIEENNTLTFIVDARANKTEIKKAIR-------------KLYQVKAVKVNTLIRPDGLKKAYIRLSAAHDALDTANKIGLV...... 145
10 -5.2703qtl_D mol:protein length:75 Kazal-type serine protease inhibitor SPI-1  ali model follow..  17  9................................................PVCGANGEVYDNEC---FLNKAGIEPAESWETCRGHELCPSVCTEEYDP........... 54

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.