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Query: gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTSEPEFQQAYDEIVSSVEDSKIFEKFPQYKKVLPIVSVPERIIQFRVTWENDNGEQEVAQGYRVQFNSAKGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLDMGGGKGGLCVDLKGKSDNEIRRICYAFMRELSRHIGKDTDVPAGDIGVGGREIGYLFGAYRSYKNSWEGVLTGKGLNWGGSLIRPEATGFGLVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQYAALKVIELGGIVVSLSDSKGCIISETGITSEQIHDIASAKIRFKSLEEIVDEYSTFSESKMKYVAGARPWTHVSNVDIALPCATQNEVSGDEAKALVASGVKFVAEGANMGSTPEAISVFETARSTATNAKDAVWFGPPKAANLGGVAVSGLEMAQNSQKVTWTAERVDQELKKIMINCFNDCIQAAQEYSTEKNTNTLPSLVKGANIASFVMVADAMLDQGDVFLast
1 -116.0003r3j_A mol:protein length:456 Glutamate dehydrogenase  ali model follow..  49  28.KNEPEFLQAFEEVLSCLKPVF--KKDNVYIGVLENIAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDL---NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLR------LKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHIKALHKLK---------QNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMKSIYEQCHNTSKIYLNE------SDLVAGANIAGFLKVADSFLEQGGL. 456
2 -114.0004fcc_A mol:protein length:450 Glutamate dehydrogenase  ali model follow..  51  22.PNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKR---HGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVAD-------YAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ---------QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEHGGEGE-------QTNYVQGANIAGFVKVADAMLAQGVI. 450
3 -113.0001aup_A mol:protein length:449 NAD-SPECIFIC GLUTAMATE DEHYDROGENASE  ali model follow..  47  16.ADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKH---ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGR------NKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFL--------MQQPNMVVAPSKAVNAGGVLVVGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGY------NLVAGANIVGFQKIADAMMAQGIAW 449
4 -112.0005xvi_A mol:protein length:460 Glutamate dehydrogenase  ali model follow..  63  5.PHEPEFEQAYKELASTLENSTLFQKNPEYRKALAVVSVPERVIQFRVVWEDDAGNVQVNRGFRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGSDFDPKGKSDNEIRRFCVSFMTELCKHIGADTDVPAGDIGVTGREVGFLFGQYRKIRNQWEGVLTGKGGSWGGSLIRPEATGYGVVYYVEHMIAHATNGQESFKGKRVAISGSGNVAQYAALKVIELGGSVVSLSDSQGSLIINGEGEIELIAQTKVERKQLASIVGAAPFSD---ANKFKYIAGARPWVHVGKVDVALPSATQNEISGEEAQVLINAGCKFIAEGSNMGCTQEAIDTFEAHR-TANAGAAAIWYAPGKAANAGGVAVSGLEMAQNSARLSWTSEEVDARLKDIMRDCFKNGLETAQEYATPAE-GVLPSLVTGSNIAGFTKVAAAMKDQGDWW 460
5 -112.0002bma_A mol:protein length:470 GLUTAMATE DEHYDROGENASE (NADP+)  ali model follow..  50  41.PNQVEFLQAFHEILYSLKPLF--MEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKS---LNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIK------EYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFK---------SNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYT-----KNKYDLQAGANIAGFLKVAESYIEQGCF. 470
6 -111.0001v9l_A mol:protein length:421 glutamate dehydrogenase  ali model follow..  30  2..ERTGFLEYVLNYVKKG-----VELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGNVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKL---WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDN--------AEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLV---VEGANGPTTPEAERILY---------ERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQREK-------GWTMRDAAIVTALERIYNAMKIRGWI. 421
7 -111.0002yfh_A mol:protein length:448 GLUTAMATE DEHYDROGENASE, NAD-SPECIFIC GLUTAMATE DEHYDROGENASE, GLUTAMATE DEHYDROGENASE  ali model follow..  52  17.ADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGFYNGVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKR---HGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVAD-------YAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ---------QAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMTDIHDGSAAAAERYGLGY------NLVAGANIVGFQKIADAMMAQGIAW 448
8 -111.0003k92_A mol:protein length:424 NAD-specific glutamate dehydrogenase  ali model follow..  27  9.DEEKEALNLFLSTQTIIKEAL--RKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKK---KGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNL---------------FTDVITNEELLEKDCDILVPAAISNQITAKNAHNIQASIV---VERANGPTTIDATKILN---------ERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHK--------VDMRLAAYMTGIRKSAEASRFRGWV. 424
9 -110.0004xgi_A mol:protein length:436 Glutamate dehydrogenase  ali model follow..  27  7.SQSPSVAQSIPSYLHADDLGRVAPYLGSLSRWIETLKRPKRILIVDVPIELDNGTVAHFEGYRVQHNVSRGPGKGGVRYHQDVTLSEVMALSAWMSVKNAAVNVPYGGAKGGIRVDPRKLSRGELERVTRRYTSEIGIIIGPNTDIPAPDVNTNEQIMAWMMDTYSMNQGTATGVVTGKPISLGGSLGRKEATGRGVFVVGCEAAKK---KGVEIEGARIAVQGFGNVGGIAAKLFQEAGAKVIAVQDHTGTIHQPAGVDTAKLLDHVGRTGGVAGFEG--------------AEPMPNDEFWTVETEILIPAALENQITEKNASKIRTKII---VEGANGPTTTAADDILS---------ANGVLVIPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINHRLERVMREAFAGVWAVAEEHK--------VSVRTAAFIVACKRILMAREMRGLY. 435
10 -110.0003aog_A mol:protein length:440 Glutamate dehydrogenase  ali model follow..  30  19LGKDGGPWEIFTEQVDRV-----VPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAEK---IGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPK--------------AEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIV---AEGANGPTTPAADDILL---------EKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKK--------IPLRTAAYVVAATRVLEARALRGLY. 433
11 -110.0005gud_A mol:protein length:471 Glutamate dehydrogenase  ali model follow..  52  35.AGEPEFHQAVAEVLESLKIVLEKDPHYADYGLIQRLCEPERQLIFRVPWVDDQGQVHVNRGFRVQFNSALGPYKGGLRFHPSVNLGIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDLEIMRFCQSFMTELHRHIGEYRDVPAGDIGVGGREIGYLFGHYRRMANHESGVLTGKGLTWGGSLVRTEATGYGCVYFVSEMIKA---KGESISGQKIIVSGSGNVATYAIEKAQELGATVIGFSDSSGWVHTPNGVDVAKLREIKEVRRARVSVY---------ADEIEGATYHTDGSIWDLKCDIALPCATQNELNGENAKTLADNGCRFVAEGANMPSTPEAVEVFR---------ERDIRFGPGKAANAGGVATSALEMQQNASRDSWSFEYTDERLQVIMKNIFKTCAETAAEYGHE------NDYVVGANIAGFKKVADAMLAQGVI. 463
12 -109.0002yfq_A mol:protein length:421 NAD-SPECIFIC GLUTAMATE DEHYDROGENASE  ali model follow..  28  1MTDTLNPLVAAQEKVRIA-----CEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGMDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESAKR---FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDYALYNENGIDFKELLAYKEANKTLIGFPG--------------AERITDEEFWTKEYDIIVPAALENVITGERAKTINAKLV---CEAANGPTTPEGDKVLT---------ERGINLTPDILTNSGGVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYN--------VTLREAVYMYAIKSIDVAMKLRGWY. 421
13 -108.0001euz_A mol:protein length:419 GLUTAMATE DEHYDROGENASE  ali model follow..  30  2..VEIDPFEMAVKQLER-----AAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKA---LGIDLKGKKIAVQGYGNAGYYTAKLAKEQGMTVVAVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPG--------------ATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIV---AEVANGPVTPEADDILR---------EKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKN--------IHMRDAAYVVAVSRVYQAMKDRGWV. 417
14 -108.0001b26_A mol:protein length:416 GLUTAMATE DEHYDROGENASE  ali model follow..  31  2..PEKSLYEMAVEQFNRA-----ASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDV---LGIDPKKATVAVQGFGNVGQFAALLIQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPK--------------GERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV---VEGANGPTTPEADEILS---------RRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYN--------VDMRTAAYILAIDRVAYATKKRGIY. 415
15 -108.0003aoe_E mol:protein length:419 Glutamate dehydrogenase  ali model follow..  25  9.PEDPGLWDTYLEWLERA-----LKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGTVPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKR---RGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSL------------------PRLDLAPEEVFGLEAEVLVLAAREGALDGDRARQVQAQAV---VEVANFGLNPEAEAYLL---------GKGALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGG--------LDLRMGALALALERLDEATRLRGVY. 418
16 -107.0003k8z_A mol:protein length:423 NAD-specific glutamate dehydrogenase  ali model follow..  26  10..TEEDKLDVLKSTQTVIHKAL--EKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYRA-HNDSVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDENSPGFITGKPLVLGGSHGRESATAKGVTICIKEAAKK---RGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKL---------------FNDTITNQELLELDCDILVPAAIENQITEENAHNIRAKIV---VEAANGPTTLEGTKILS---------DRDILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRR--------IDMRLAAYMVGVRKMAEASRFRGWI. 423
17 -107.0001bvu_A mol:protein length:418 PROTEIN (GLUTAMATE DEHYDROGENASE)  ali model follow..  29  4........DPFEIAVKQLERAA--QYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAIYDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRPSFGVITGKPPSVGGIVARMDATARGASYTVREAAKA---LGMDLKGKTIAIQGYGNAGYYMAKIMSEEGMKVVAVSDTKGGIYNPDGLNADEVLAWKKKTGSVKDFPG--------------ATNITNEELLELEVDVLAPSAIEEVITKKNADNIKAKIV---AELANGPTTPEADEILY---------EKGILIIPDFLCNAGGVTVSYFEWVQNITGDYWTVEETRAKLDKKMTKAFWDVYNTHKEKN--------INMRDAAYVVAVSRVYQAMKDRGWI. 416
18 -104.0001gtm_A mol:protein length:419 GLUTAMATE DEHYDROGENASE  ali model follow..  31  4........DPYEIVIKQLERAA--QYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLG--WDTLKGKTIAIQGYGNAGYYLAKIMSEDGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPG--------------ATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIV---AEVANGPVTPEADEILF---------EKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKN--------IHMRDAAYVVAVQRVYQAMLDRGWV. 417
19 -103.0001hwy_A mol:protein length:501 GLUTAMATE DEHYDROGENASE  ali model follow..  22  4.EDDPNFFKMVEGFFDRGASITQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGGPGVDVPAPNMSTGEREMSWIADTYASTIGNAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFP---------------KAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKII---AEGANGPTTPQADKIFL---------ERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 500
20 -100.0001l1f_A mol:protein length:505 Glutamate Dehydrogenase 1  ali model follow..  23  8.EDDPNFFKMVEGFFDRGASISEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPK---------------AKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKII---AEGANGPTTPEADKIFL---------ERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGTAMKYNLGLDLRTAAYVNAIEKVFKVYNEAGVTF 504
21 -96.2006dhm_A mol:protein length:582 Glutamate dehydrogenase 1, mitochondrial  ali model follow..  23  85.EDDPNFFKMVEGFFDRGASITEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKFIGPGVDVPAPDMSTGEREMSWIADTYASTIGNAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFP---------------KAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKII---AEGANGPTTPEADKIFL---------ERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTVHSGLAYTMERSARQIMRTAMKYNL------GLDLRTAAYVNAIEKVFRVYNEAGVTF 581
22 -96.2005k12_A mol:protein length:558 Glutamate dehydrogenase 1, mitochondrial  ali model follow..  23  61.EDDPNFFKMVEGFFDRGASITEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGF---------------PKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKII---AEGANGPTTPEADKIFL---------ERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 557
23 -73.0001leh_A mol:protein length:364 LEUCINE DEHYDROGENASE  ali model follow..  19  1.................................MEIFKYMEKYDYEQLVFCQDEAS--GLKAVIAIHDTTLGPALGGARMWTYNAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGL-----NGRYITAEDVGTTVDDMDLIHQET--------DYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEA-FGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE--------------------------------GADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVI---AGSADNQ--------LKDPRHGKYLHELGIVYAPDYVINAGGVINVADELYG------YNRTRAMKRVDG-IYDSIEKIFAISKRDG--------VPSYVAADRMAEERIAKVAKARSQF. 353
24 -72.2003vpx_A mol:protein length:364 Leucine dehydrogenase  ali model follow..  18  1.................................MEIFKYMEHQDYEQLVICQDKAS--GLKAIIAIHDTTLGPALGGTRMWTYASIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKTDKNDEMFRAFGRYIEGL-----NGRYITAEDVGTTEADMDLINLETD--------YVTGTSAGAGSSGNPSPVTAYGIYYGMKAAAKEA-FGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINEEAVQRAVDAF--------------------------------GATAVGINEIYSQEADIFAPCALGAIINDETIPQLKAKVI---AGSANNQLKETRH--------GDLIHEMGIVYAPDYVINSGGVINVADELDG------YNRERALKRVEG-IYDVIGKIFAISKRDN--------IPTYVAADRMAEERIARVANTRSTF. 353
25 -68.0001bw9_A mol:protein length:356 PHENYLALANINE DEHYDROGENASE  ali model follow..  18  18.....................................................FDSMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTWILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLNDTTEF--------VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRG--LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV---------------------------------ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVV---AGAANNVIADEA--------ASDILHARGILYAPDFVANAGGAIHLVGREVLG-----WSESVVHERAVA-IGDTLNQVFEISDNDG--------VTPDEAARTLAGRRAREASTTTAT.. 355
26 -66.2005b37_A mol:protein length:361 Tryptophan dehydrogenase  ali model follow..  17  1.................................MLLFETVRE--MGHEQVLFCHSKNPEIKAIIAIHDTTLGPAMGATRILPYINLKDALRLSRGMTYKAACANIPAGGGKAVIIANPENKTDDLLRAYGRFVDSLNGRFIGQDVNITPDDVRTISQETKYVVGVSEKS----------------GGPAPITSLGVFLGI---KAAVESRWQSKRLDGMKVAVQGLGNVGKNLCRHLHEHDVQLFVSDVDPIKAEEVKRLF--------------------------------GATVVEPTEIYSLDVDIFAPCALGGILNSHTIPFLQASII---AGAANNQLENEQLH-------SQMLAKKGILYSPDYVINAGGLINVYNEMIG------YDEEKAFKQVHN-IYDTLLAIFEIAKEQG--------VTTNDAARRLAEDRINNSKRSKSKAI 351
27 -11.6004q39_A mol:protein length:260 PYLD, pyrrolysine synthase  ali model follow..  22......................................................................................SAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSAS-LHAITQYFGFDSFVT------DMPDVSGYYEAVQNGAEIILMAFLAHNLKNGKMANNQPCTGIIYAEIASRYL--------KADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYD-----------ADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSE----VLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSV............................................................................................................. 259
28 -9.7302a9f_A mol:protein length:398 putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating))  ali model follow..  12  70...................................................................................VISDGTAVLGLGDIGPEAAMPVMEG-AFAGVDAIPIVLDTKDTEE----IISIVKALAPTFGGINLEDISAPR-----IEQRLIKECHI-----------------HDDQHGTAIV-VLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALE-------------------GADIFIGVSAPGVLKAEWISKMAARPVIFAMANPIPEIYPDEALEAGTGRSDFPNQINNVLAFPGIFR---GALDARAKTIT----------------VEMQIAAAKGIASLVPDDALSTTN--DAFKEGVAEIVAKSVRSVVLKSEG... 392
29 -9.2602hae_A mol:protein length:386 Malate oxidoreductase  ali model follow..  13  13..........................................................................KGKIRTALPVEKVDRETLSLLYT--------GVADVARACAEDPEKTYVYTSRWNTVAVVSDGSAVLGLGNIGPGALPVMEGKAF--LFKAFESEEEKIISIVKSLEPSFGGIN-HDDQQGTAVV-VSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDP-------------------TCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPELARIVATGRSDHPNQVNNLLAFPGIMK---GAVEK--------------RSKITKNMLLSAVEAIARSCEPEPERIIPEAFDMKVHLNVYTAV--------KGSAEG... 380

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.