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Query: gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWEQRRQKVVFSLTILVRYRLKQSMAKKISKNSRAARQSDALEPEVKDLSELPRAEKTDLTNILIRTAAKNEALLEAKISKKANKSKRGKKLNKKALEDKLDNSISSMDRDRLVKALNFTNRLDGKIAKSISRAKYIQNTRKAGWDSTNETIKKELAFLNGGLSVQAKSASEGNAEKEDEEIPEVFDSLAEDNTVQKTPTNRFGVLPDDVEELast
1 -7.0406b5v_A mol:protein length:730 Transient receptor potential cation channel subfamily V member 5  ali model follow..  592LWRAQVVATTVML----------ERKMPRFLWPRSGICGYEYGLGDRWFLRVENHHDQNPLR-----------VLRYVEAFKCSDKEDGQEQLSEKRPSTVESGMLSRASVAFQT-------------PSLSRTTSQSSNSHRGWEILRRNTLGHLNLGLDLGEGDGEE........................................... 726
2 -6.8506cc4_A mol:protein length:614 soluble cytochrome b562, lipid II flippase MurJ chimera  ali model follow..  16  8.WETLNDN----LKVIEKADNAAQVKTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLKSL------AAVSSMTMFSRVLGFARDAI................................................................................. 130
3 -6.7905x6o_G mol:protein length:747 DNA damage checkpoint protein LCD1  ali model follow..  10  1...MRRETV---LLELGTRPPRFTQIPPSSAALQTQIPTTLEVTTTTLNNKQS--KNDNQLVNQLNKAQGEASMLRDKINF------NIEREKEKNIQAVKVNELQVKHLQELAKLKQELQKLEDEKKFLQMEARGKSKREVITNVKPPSTTLSTNTNTITPDSSSVAIEAKPQSPQSKK................................ 178
4 -6.7104huq_T mol:protein length:280 Energy-coupling factor transporter transmembrane protein EcfT  ali model follow..  124....RFLLIIMMSTLLTLSTQPLDIATGLASLMKPLRWVKVPVDTLAMMLSI-----------ALRFVPTLMDEATKIMNAQRARGVDFGEGGLFKQAKSLIPLMVPLFMSAFNRAEDLSTAMEARGYQDSEHRSQYRILTWQRRDTV................................................................ 256
5 -6.5404did_B mol:protein length:152 Inositol phosphate phosphatase sopB  ali model follow..  11  72..........................................................................MANQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQQDGLPAKEAHRFAAVAFRDAQVKQLNNQPWQTIKNTLT........................................................... 150
6 -6.5305d3m_D mol:protein length:265 Energy-coupling factor transporter transmembrane protein EcfT  ali model follow..  112........VFIRFAMIILVSTVMTVTTKPLEIADAMEWMLTP-----KLFKVNVGMISLVISIALRFVPTLFDQTVKIMNAQRSRGADFNDGGLVKRAKSVVPMLVPLFIDSLEVALDLSTAMESRGYKGSEGRTRYRILEWSKVDLI................................................................ 247
7 -6.2906bo8_A mol:protein length:742 Transient receptor potential cation channel subfamily V member 6  ali model follow..  592LWRAQIVATTVMLSGICGREYGLGDRWFLRVEDRQDLNRQRIQRYAQAFHTRGSEDLDKDSVEKLELGCPFSPHLSLPMPSVSRSTSRSSANWERLRQGTLRRDLRGIINRGLEDGESWEYQI------------LVPRGSAAAWSH................................................................. 737
8 -6.0406e2g_A mol:protein length:727 Transient receptor potential cation channel subfamily V member 6  ali model follow..  13  591LWRAQVVATTVML----ERKLPRCLWPRSGICGREYGLGDRWFLRVEDRQDLNRQRIRRYAQAFQQQDDLYSEDLEKDSGEKLEMARPFGAYLSFPTPSVSRSTSRSSTNWDRLRQGALRKDLQGIINRGLEDGE--------GWE.................................................................. 724
9 -5.7505x41_Q mol:protein length:256 Uncharacterized protein CbiQ  ali model follow..  10  114....RATAATCCLLFLATTT-------PAADLLSGLRRWRVPAELIEIALLTYR-------------------LAEEAAAMTTAQRARLGHATRRRWLRSTAQVIAALLPRALTRARRLETGLGAR-----GEMRVLSTRPPASARVL................................................................ 233
10 -5.7006btm_F mol:protein length:464 Alternative Complex III subunit F  ali model follow..  11  1MYTSKLKTFSIILMVLGLLGIG------------GFLSAPKDIQEVEKILAADAHGAHGTAHGESAEASHKEAGHHEAAEASHEEHKGGEHAKVGAADEHTEHLNH-QLQNKPWSALYVACIFFLLLSMGVLAFYAIQQVAQAGWSPVLFRVMQGITA...................................................... 151

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.