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Query: gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPPPSRSRINKTRTLGIVGTAIAVLVTSYYIYQKVTSAKEDNGARPPEGDSVKENKKARKSKCIIMSKSIQGLPIKWEEYAADEVVLLVPTSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCVRRLGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSDVEDVLIDTLCNLast
1 -74.1002y9m_B mol:protein length:130 PEROXISOME ASSEMBLY PROTEIN 22  ali model follow..  97  1..................................................GAMENKKARKSKCIIMSKSIQGLPIKWEEYAADEVVLLVPTSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCVRRLGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSDVEDVLIDTLCN 130
2 -57.8005nkz_D mol:protein length:138 Peroxin 22  ali model follow..  1........................GAMAWALKTI------NPGLFEEPAKTSEASKSNGQSVSLVLTQKDLDFFSAAYLNEYPNLTVILHPSVDKSEFLSRFNV----QRNSHQVIQVRTEESIFHVLKQLSSNINLITLGNLEMSANEVET----HLDKFLTNVHEVDRINDYI..... 138
3 -8.3501x4f_A mol:protein length:112 Matrin 3  ali model follow..  12  1....................................GSSGSSGKKPEGKPDQKFDQKQELGRVIHLS------NLPHSGYSDSAVLKLAEP---------KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVSG....................... 108
4 -6.6101x4d_A mol:protein length:102 Matrin 3  ali model follow..  2...............................................SSGSSGQKGRVETRRVVHIM------DFQRGKNLRYQLLQLVEP---------VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKSG....................... 98
5 -6.5804ddz_A mol:protein length:344 GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE (GpgS)  ali model follow..  12  37.......................................DTTWHRPGWTIGELEAAKAGRTISVVLP--ALNEEATIESVIDSDELIVLDSGSTDDTEIRAIASGARVVSREQALPEVPVRPGLWRSLAATSGDIVVFIDSDLINPH-------PLFVPWLVGPLLTGEGIQLVKSFYRR 181
6 -6.4903e25_A mol:protein length:337 Putative uncharacterized protein  ali model follow..  12  23.......................................DTTWHRPGWTIGELEAAKAGRTISVVLP--ALNEEATIESVIDSDELIVLDSGSTDDTEIRAIASGARVVSREQALPEVPVRPGLWRSLAATSGDIVVFIDSDLINPH-------PLFVPWLVGPLLTGEGIQLVKSFYRR 167
7 -6.3702coe_A mol:protein length:120 deoxynucleotidyltransferase, terminal variant  ali model follow..  1....................................GSSGSSGTGALMASSPQDIKFQDLVVFILLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVS-----W-LIECIGAGKPV........................................... 106
8 -6.2705xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  10  38......................................DPIAKPACNAKAVETRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPVVP---------------------------------VNEISQDYLIATSTSIDVAANATEAQVEAAMVDYLKAPFTIKKGN........ 144
9 -6.1805ell_A mol:protein length:238 Asp/Glu_racemase family protein  ali model follow..  76.................AEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQIIFEELCLGQ----FTEASRAYYAQVIARLAEQGVIFGCTEIGLLVPEERSVLP......................... 212
10 -6.0903ckj_A mol:protein length:329 Putative uncharacterized protein  ali model follow..  11  27......................................ADRSWNRPGWTVAELEAAKAGRTISVVLP--ALDEEDTIGSVIDSDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGLWRSLAASRGDIVVFVDSDLINPH-------PMFVPWLVGPLLTGDGVHLVKSFYRR 172

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.