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Query: gi|6319278|ref|NP_009361.1| Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS); Cyc3p (YAL039C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGWFWADQKTTGKDIGGAAVSSMSGCPVMHESSSSSPPSSECPVMQGDNDRINPLNNMPELAASKQPGQKMDLPVDRTISSIPKSPDSNEFWEYPSPQQMYNAMVRKGKIGGSGEVAEDAVESMVQVHNFLNEGCWQEVLEWEKPHTDESHVQPKLLKFMGKPGVLSPRARWMHLCGLLFPSHFSQELPFDRHDWIVLRGERKAEQQPPTFKEVRYVLDFYGGPDDENGMPTFHVDVRPALDSLDNAKDRMTRFLDRMISGPSSSSSAPLast
1 -8.6805tzp_A mol:protein length:148 Bcl-2-like protein FPV039  ali model follow..  7  1.......................................................GPLGSMASSNMKDETYYIALNMIQNYIIEYNTNKPRKSFVIDSISYDVLKAACKS-KTNYNEFDIIISRNIDFNVIVTQVLEDKINWGRI--------ITIIAFCAYYSKKVKQDTSPQYYDGIISEAITDAILSKYRSWFIDQDYWNG------------IRIYKN............................................... 148
2 -7.3701z06_A mol:protein length:189 Ras-related protein Rab-33B  ali model follow..  11  40...............................................................PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR---------NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS.................................................................................... 152
3 -6.9802g77_B mol:protein length:198 Ras-related protein Rab-33B  ali model follow..  11  49...............................................................PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR---------NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS.................................................................................... 161
4 -6.0506ck0_A mol:protein length:220 Biotin acetyl coenzyme A carboxylase synthetase  ali model follow..  10  16....................................................STQTYLLEKLKNNELKAPILIVAKNQSTG---IGSRGNIWEGTKSALTFSLALNASDLPKDLPMQANALYLGFLFKEVLKELGSQTWLKWPN............................................................................................................................. 104
5 -5.9605ii7_A mol:protein length:138 Egg-lysin  ali model follow..  11  2........................................................................................GRSWHYVEPKFLFDRGLVKWLRVHGRTLSTVQKKALYFVNRRYMQTHWANYMLWINKKIDALGRTPVVGDYTRLGAEIGRRIDMAYFYDFLKDKNMIPKYPYMEE............................................................................ 122
6 -5.9305v50_A mol:protein length:175 PR-1 protein  ali model follow..  8  1..............................................................................................PAAE-----------LEARQFDPDSFKNKWLELHNNERTTRQLDSLEWDGDLAWKAQQVATQCNVDNPQGRYTKEQAFAEWTATSGSFPDDRSIPWQRIVANSAQCGEATCVLEGDMAYTVNVCYY--DPPLSDYYTNAGDNVRVPSLA.......................... 150
7 -5.8804y4q_A mol:protein length:243 Sortase, SrtB family  ali model follow..  12  26...........................................FTMDSNQVYSLASSSEYEAYRPVTTQQDELASFSGFSKLQELNPEVLGWIYPKDNEKYGEFAATGFLDARNNPKFEDFNTIIYGHHVENGVMFGDVAKFADQEFFDQHRYGSIYYNGVEKGGIQGEDRQQAYLDHLLSAMHKRDISLSPSDRIIL------STCFLDVTNGRHIV................................................... 235
8 -5.8704ux7_A mol:protein length:242 PUTATIVE PEPTIDASE C60B, SORTASE B  ali model follow..  10  25............................................KDHQTSLYKKAGSAAAPFTHDTKISSELQKKEYKKEDLSKINSDFKFWLYPDNSYYLDKDFYKKDSISGRNKSIDDKNIIIYGHNMKNKTMFNNLNKFKDADFFKKNNKIKITLNGKEFLYDVFSAYIVESDYDYLKTNFNNESDYQNYNDITSKSLYKSPIKVNSNDKIRMVI................................................... 231
9 -5.7704qgo_A mol:protein length:225 DNA-entry nuclease (Competence-specific nuclease)  ali model follow..  10  1.GSAAASSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLNADVNVKAYVQNTIDNQQRPSTANAMLDRTINRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGANFKGWDASVSNPQNVVTQTAHSNQSNQKIQNYYESLVRKAVDQNKRVR-YRND-TDLVPFAMHLEAKS-----------------------GTLEFNVAIPNTQASYTMDYATGEITLN......................................... 225
10 -5.7601y6i_A mol:protein length:233 Mg-chelatase cofactor GUN4  ali model follow..  8  69.....TITTQLQRNYPTGIFPLQSAQGIDYLPLQEALGSQD--------ETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALD--NALWWLHSNGNFGFSVQRRLWLASGKEFTK-----------LWPKIGWKSGNVWTRWPKG--------FTWD------APQGHLNQLRGVRVAESLYRHPVWSQYGW.......................................................................... 233
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.