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Query: gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNSATSETTTNTGAAETTTSTGAAETKTVVTSSISRFNHAETQTASATDVIGHSSSVVSVSETGNTKSLITSGLSTMSQQPRSTPASSIIGSSTASLEISTYVGIANGLLTNNGISVFISTVLLAIVWLast
1 -6.990PF07666.11; Q8EWG6_MYCPE/16-144; M penetrans paralogue family 26  ali follow..  36  41........................................................................................ISNPEEASLKSSVLIGIASLLLMGIGIAIFVLEIMLTV.. 83
2 -6.950PF01054.17; PR73_MMTVC/52-256; Mouse mammary tumour virus superantigen  ali follow..  18  17.............................................RARRALTLDSFNSSSVQDYNLNNSENSTFL-LRQGPQPTSSYKPHRFCPSEIEIRMLAKNYIFTNKTNPIGRLLVTML..... 93
3 -6.420PF11667.8; Q5JH59_THEKO/55-158; Putative zincin peptidase  ali follow..  18  25.........................................................................................FGISAKYGMVTPYISFRTPLTVKKARYVIVAPILISIA. 62
4 -6.360PF03073.15; E3I2Y5_RHOVT/25-168; TspO/MBR family  ali follow..  16  27..............................................................................NKPSWQPPDWAFGPAWTIIYAF--TALAAVYAKLTIIVLFLCTAFFNLLW 83
5 -6.230PF09201.10; A7TFS7_VANPO/1-148; SRX, signal recognition particle receptor alpha subunit  ali follow..  19  9...........TPTGEVLYEYNPLNKKAMLNQVNAFISHLVNMPVSKKDDINSKLTIINVTQEKSTRSF--SAMFHISKQPE------VITYAEQSLELNNEAESTLNLVLALWDSLDLNQSIL.... 116
6 -6.210PF16505.5; F8T054_9VIRU/13-361; P4 movement protein of Emaravirus, and the 30K superfamily  ali follow..  17  3.......................................PSTSGMKPTDVNNHEFTKDGLNSIESMTEITWNSIKSM-----NVKVRLPVKAETCELPISVYHDLWKRWMATKQAMTRIAN--VAVLW 84
7 -5.850PF06024.12; Q461Z4_9ABAC/3-123; Orf78 (ac78)  ali follow..  13  23..............................................AVNDIDENGYRKPKQKANDDSDDNDNIIN------KSQTSPSLLANDFGNTNYIAYANATQGGILNALLSIFCVLVILYAIY 102
8 -5.780PF14007.6; D6XSR8_BACIE/4-90; YtpI-like protein  ali follow..  19  15...........................................................................KMRQYRSTYEAVKHSYASKASMAVGLFMAINSYVQLQTTVAAVILLLFLAM.. 68
9 -5.590PF00164.25; RS12_THEKO/32-146; Ribosomal protein S12/S23  ali follow..  12..........................................................PLEGAPQARGIVLEKIAVEAKQPNSAMRKAVVQLIKNGKVVTAFTGAINHIDEHDEVII........... 74
10 -5.570PF08219.11; M7T1U9_EUTLA/17-96; Outer membrane protein TOM13  ali follow..  18  1..................................................MHSDSEQYSAGEDVLSSSPNSSSPIVLYKPPT-------MWSLIRGTAINLVLPFINGMMLGFG-ELFAHEAAFRLGW 70

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35