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Query: gi|6319252|ref|NP_009335.1| Putative protein of unknown function; has homology to FLO1; possible pseudogene; (YAL065C) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNSATSETTTNTGAAETTTSTGAAETKTVVTSSISRFNHAETQTASATDVIGHSSSVVSVSETGNTKSLITSGLSTMSQQPRSTPASSIIGSSTASLEISTYVGIANGLLTNNGISVFISTVLLAIVWLast
1 -6.700d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  4................................................................DPVEIENRIIELCHQFPHGI-TDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLL.......... 56
2 -6.650d2k7va1 b.84.1.1 (A:2-89) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  21  32.........................................................................................VEGDKASMEVAPFAGVVKELKVNVGDKVKTGSLIMIF.. 69
3 -6.380d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  20  20.........................................................................LSTHSKKWPGFPFGSVVPYCLDAILISRIAQHTHNLQADPRCSMLVGE....... 72
4 -6.340d1k8ma1 b.84.1.1 (A:1-85) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  41.........................................................................................VQSDKASVTISRYDGVIKKLYYNLDDIAYVGKPLVDI.. 78
5 -6.330d1fjgl_ b.40.4.5 (L:) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  17.....................................................KSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIGEGHNLQEHSVVLI........... 81
6 -5.860d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  18  26........................................................................GLIPVGQPCNQVTTTGL---TNDVLGFGTLVSTSNTYDGSGLVTVETDHPLLWTM. 81
7 -5.860d5bnca_ b.45.1.0 (A:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  16  32.........................................................................LATLTTEPWASFVTYGLLGGAPVLCVSDMAEHGRNLAHDPRASIAIVA....... 81
8 -5.720d2l5ta_ b.84.1.1 (A:) automated matches {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  24  38.........................................................................................VMTDKVTVKISPVRGKIVKILYREGQVVPVGSTLLQI.. 75
9 -5.610d2vk8a2 c.31.1.0 (A:182-360) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  7  1........................QTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVADLILSV.. 104
10 -5.500d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}  ali model 3D-neighbors follow..  10  2....................YGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM............ 97
FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35