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Query: gi|6319253|ref|NP_009336.1| Fungal-specific protein of unknown function; Yal064w-bp (YAL064W-B) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAGEAVSEHTPDSQEVTVTSVVCCLDSVVEIGHHVVYSVVTPLIVAVLIDTMAGEAVLEHTSDSQEEIVTTVVCSVVPLVCFVVSVVCFVISVVEIGHHVVYSVVAPLTVTVAVETIAEEMDSVHTLast
1 -6.750d3s8ga_ f.24.1.1 (A:) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  224...............................GHPIVYFWLLPAYAIIILPKQAGGKLVSDP------------------MARLAFLLFLLLSTPVGFHHQFADIHSVLTLFVAVPSLMTAFTVAAS 311
2 -6.540d2cwza1 d.38.1.7 (A:1-138) Hypothetical protein TTHA0967 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  7............GYEAVFETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEA.................... 100
3 -5.810d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  12  5...........................................EVNIVLNPNLDQSQLALEKEIIQRAAENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNV.. 85
4 -5.310d3ag3a_ f.24.1.1 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  13  239...............................GHPEVYILILPGMISHIVTYYSGKKEP-----------------FGYMGMVWAMMSIGFLGFIVWAHHMTRAYFTSATMIIAIPTGVKVFSWLAT 326
5 -5.310d5i8da1 b.1.6.0 (A:1929-2038) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  18  17.....VMENSPAGTPLTVLNGILALDADEDVYAVVTYQLLGTHSDLFVIDNSTGVVTVRSGIIIDREAFSPPFLELL................................................. 89
6 -5.020d3nkea_ e.79.1.1 (A:) Cas1 C-terminal fragment {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  13  83........................INQCISAATSCLYGVTEAAILAAGYAPAIGSFVYDIADIIKFDTVVPKAFEIA................................................. 143
7 -4.870d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  7...........................................SMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQELENFYRVTPEI.. 87
8 -4.730d3wu2e_ f.23.38.1 (E:) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus vulcanus [TaxId: 32053]}  ali model 3D-neighbors follow..  16  2..................TGERPFSDIITSVRYWVIHSITIPALFILAYDVFGTPRPDSYYAQEQRSI.......................................................... 60
9 -4.590d3goda_ e.79.1.1 (A:) Cas1 {Pseudomonas aeruginosa UCBPP-PA14 [TaxId: 208963]}  ali model 3D-neighbors follow..  220........................ANRFLDHGNYLAYGLAATATWVLGIPHGLA---VLHGKTRRGGLVFDVADLIKDSLILPQAFLS...................................... 280
10 -4.550d3dh1a1 c.97.1.0 (A:20-173) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  14......AKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFTVLYVTVEPCIMCAAALRLMKIPLVVYG............................. 106

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.