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Query: gi|6319256|ref|NP_009339.1| NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; Gdh3p (YAL062W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTSEPEFQQAYDEIVSSVEDSKIFEKFPQYKKVLPIVSVPERIIQFRVTWENDNGEQEVAQGYRVQFNSAKGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLDMGGGKGGLCVDLKGKSDNEIRRICYAFMRELSRHIGKDTDVPAGDIGVGGREIGYLFGAYRSYKNSWEGVLTGKGLNWGGSLIRPEATGFGLVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQYAALKVIELGGIVVSLSDSKGCIISETGITSEQIHDIASAKIRFKSLEEIVDEYSTFSESKMKYVAGARPWTHVSNVDIALPCATQNEVSGDEAKALVASGVKFVAEGANMGSTPEAISVFETARSTATNAKDAVWFGPPKAANLGGVAVSGLEMAQNSQKVTWTAERVDQELKKIMINCFNDCIQAAQEYSTEKNTNTLPSLVKGANIASFVMVADAMLDQGDVFLast
1 -76.900d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  40  1...................................................................................................................................................................................KARSFGGSLVRPEATGYGSVYYVEAVMKHE---NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNK------VQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQ--------QPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGY------NLVAGANIVGFQKIADAMMAQGIAW 255
2 -76.000d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  31  2........DPYEIVIKQLERAA--QYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRAFGIITGKPLSI................................................................................................................................................................................................................................................................................. 178
3 -73.500d1hwxa3 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  26  4.EDDPNFFKMVEGFFDRGASITQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHAHACVTGKPISQGGI.............................................................................................................................................................................................................................................................................. 208
4 -71.900d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  58  16.ADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGYNGVLTG...................................................................................................................................................................................................................................................................................... 194
5 -70.300d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  31  1........................................................................................................................................................................................GGSLGRIEATARGASYTIREAAKVLGW--DTLKGKTIAIQGYGNAGYYLAKIMSEDFGKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPG--------------ATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIV---AEVANGPVTPEADEILF---------EKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKN--------IHMRDAAYVVAVQRVYQAMLDRGWV. 237
6 -62.500d1hwxa4 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  19  2............................................................................................................................................................................................GRISATGRGVFHGIENFIENASYMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPK---------------AKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKII---AEGANGPTTPQADKIFL---------ERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTF 292
7 -48.500d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors follow..  17  12................................................MTVTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTT--------EFVFGRSLERGGA.............................................................................................................................................................................................................................................................................. 146
8 -48.200d3vpxa1 c.58.1.0 (A:1-133) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  18  1.................................MEIFKYMEH--QDYEQLVICQDKASGLKAIIAIHDTTLGPALGGTRMWTYASIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKTDKNDEMFRAFGRYIEGL-----NGRYITAEDVGTTEADMDLINLETDYV................................................................................................................................................................................................................................................................................................ 133
9 -45.100d3vpxa2 c.2.1.0 (A:145-363) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  18  3..............................................................................................................................................................................................SPVTAYGIYYGMKAAAKEAF-GDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINEEAVQRAVDAF--------------------------------GATAVGINEIYSQEADIFAPCALGAIINDETIPQLKAKVI---AGSANNQLK--------ETRHGDLIHEMGIVYAPDYVINSGGVINVADELDG------YNRERALKRVEG-IYDVIGKIFAISKRDN--------IPTYVAADRMAEERIARVANTRSTF. 209
10 -45.000d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors follow..  17  2..............................................................................................................................................................................................AFTTAVGVFEAMKATVAHRG--LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV---------------------------------ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVV---AGAANNVIA--------DEAASDILHARGILYAPDFVANAGGAIHLVGREVLG-----WSESVVHERAVA-IGDTLNQVFEISDNDG--------VTPDEAARTLAGRRAREA........ 200
11 -10.400d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  5................................................................................................................................................................................................GCRESLIDGIKRAT------DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITE---------------------------------IDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWDRYRLKNGRRIILLAEGRLV--NLGCAMG................................................................................ 163
12 -9.530d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  1...............................................................................................................................................................................................DQQGTAVV-VSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN------------------ENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPELARIVATGRSDHPNQVNNLLAFPGIMK---GAVEK--------------RSKITKNMLLSAVEAIARSCEPEPERIIPEAFDMKVHLNVYTAVK................ 219
13 -9.080d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Methanothermus fervidus [TaxId: 2180]}  ali model 3D-neighbors follow..  17  2..........................................................................................................................................................................................................................KAVAINGYGTVGKRVADAIAQQDMKVIGVSKTR---------DFEARMALKKGYDLYVAIPERVKLFEKA-----GIEVAGTVDDMLDEADIVIDC-TPEGIGAKNLKMYKEKGIKAIFQGGEKHEDIGL-SFNSLSNYEESYGKDYTRVVXIVPENVDAVR............................................................................. 149

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.