current user: public
If you have questions about the server, please let us know.

Query: gi|6319259|ref|NP_009342.1| Protein of unknown function, localized in the nucleoplasm and the nucleolus, genetically interacts with MTR2 in 60S ribosomal protein subunit export; Ecm1p (YAL059W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210
# Score Template Links and tools%idFirst MWEQRRQKVVFSLTILVRYRLKQSMAKKISKNSRAARQSDALEPEVKDLSELPRAEKTDLTNILIRTAAKNEALLEAKISKKANKSKRGKKLNKKALEDKLDNSISSMDRDRLVKALNFTNRLDGKIAKSISRAKYIQNTRKAGWDSTNETIKKELAFLNGGLSVQAKSASEGNAEKEDEEIPEVFDSLAEDNTVQKTPTNRFGVLPDDVEELast
1 -6.070d4i43b3 c.52.1.36 (B:1653-1838) Pre-mRNA splicing factor 8, Prp8 / Spp42 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  16  1LWQKIHESIVFDICQILDGELDVLQIESVTKETVHPRKSYKMNSSAADI................................................................................................................................................................... 49
2 -5.560d2xwla1 c.68.1.0 (A:2-219) automated matches {Mycobacterium smegmatis [TaxId: 1772]}  ali model 3D-neighbors follow..  10  76..VDRTESVALALEAAGDAE--------VLVHD-AARALTPPALIARVVAALKEGHSAVVPGLAPADTIKAVDANGAVLGTPERAGLRAVQTPQGFHADVLRRAYARATAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLD.................................................................... 209
3 -5.500d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  7KWYDRRDYVFIEFCV-SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSK.......................................................................................................................................................... 65
4 -5.020d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  2..EDLIDGIIFAANYLGSTQLLSDKTPSKNVRMEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDLFILTQRIKVLNADTQETMMDHP-RIPRSNSQENVEASHPSQDGKRQYKMICHVFESEDAQLIAQSIGQAFSV........................................................................... 159
5 -5.000d3c2ua2 b.29.1.0 (A:327-538) automated matches {Selenomonas ruminantium [TaxId: 971]}  ali model 3D-neighbors follow..  6  19.FQTLRIPFSEHLGSLTARPYGRESLQSKFTQAHIARRWQSFNFDAGTSVEFSPNSFQQMAGLTCYYNTENWSSIHVTWNEEKGRIIDLVTADNGTFSMPLAGAEIPIPDEV--------KTVHFKVSVRGRIYQYAYSFDGETFHTLPIELPSW......................................................... 169
6 -4.960d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  70........VLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERANLRVITQNRQALS---DITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIGFYQSITADGNWG................................ 238
7 -4.730d3m4ta_ d.42.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  22..EQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRA.............................................................................................................................................................. 73
8 -4.730d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  38.........................................................................................SHPREPLSRDKLMNLARGREYSAMERSIDVISRLRRMVEEDPAHPRYIQTVWGLGY................................................................... 94
9 -4.660d3zdsa_ b.82.1.0 (A:) automated matches {Pseudomonas putida [TaxId: 160488]}  ali model 3D-neighbors follow..  7  256.WHGSNVPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHGMANMDFVIFPPRWMVAENTFRPPWFHRNLM--GFLPGGASLHGVMSAHGPDAETCEKAIAADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFNPNRR....................................................... 425
10 -4.650d2a73b6 b.23.4.1 (B:912-962,B:1269-1330) Complement C3 CUB domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  13.TPERLDIPPADLSDQVPDTESETRILDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLS........................................................................................................................................ 105
FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35