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Query: gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPPPSRSRINKTRTLGIVGTAIAVLVTSYYIYQKVTSAKEDNGARPPEGDSVKENKKARKSKCIIMSKSIQGLPIKWEEYAADEVVLLVPTSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCVRRLGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSDVEDVLIDTLCNLast
1 -8.100d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  1...........................................KKPEGKPDQKFDQKQELGRVIHLS------NLPHSGYSDSAVLKLAEP---------KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV......................... 99
2 -6.820d3eika1 d.129.1.0 (A:20-113) automated matches {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}  ali model 3D-neighbors follow..  7  1...................................................................................GIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDF... 94
3 -6.210d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  7  8..................................................................RRVVHIMDFQRGKNLRYQLLQLVEP---------VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK......................... 89
4 -6.140d5hqta2 c.78.2.0 (A:117-230) automated matches {Escherichia coli [TaxId: 1330457]}  ali model 3D-neighbors follow..  6  2...........................................................TRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKI----NQIIFEELCLGQFTEASRAYYAQVIARLAEQGVIFGCTEIGLLVPEERSVLP......................... 96
5 -6.120d2zska2 c.78.2.0 (A:115-226) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  9  2...........................................................RKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASE................ 112
6 -5.750d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  12  2...........................................................KKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLK------LGRELLLKTAKILEEECIIAGCTEVSVVLKQDDLKVP......................... 94
7 -5.710d3td9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  24..................GIQIAHEEKPTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-------GRKFVSRVCFIDPFQG--FAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKR-SGDQDFSAQLSV 184
8 -5.450d3oiia_ c.116.1.6 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  4...................................................LTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKM-DISEARPDITHQCL---NKAGKLQVYIQTSRGILIEVNPTV---------RIPRTFKRFSGLMVQLLHKLSI...... 123
9 -5.380d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  14  89...............................................EKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVAYVFIAREYKRQAKNPLVIGLTASPGIMEVINNLGIEHIEYRSEN------------SPDVRPYVK................. 200
10 -5.300d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  13  2...............................................................................................................EISFLHADDEMNYLIYKKTDGDETVLVI---INRSDQKADIPIPLDAR..................... 46
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.